Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U584194 in the current build, Tomato 200607 #2

Unigene SGN-U320582

Unigene Basic Information

Unigene ID:	SGN-U320582
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	320582
mRNA sequence:	Length: 2068 bp

>SGN-U320582 Tomato 200607 #1 (11 members)
AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAAC
AAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCT
CATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAA
GCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCT
CCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATA
CTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTA
AGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATCTTAGTTGAGGATGGT
CTGGATCCCTCTTCAGAGGAGTATGGTCTGATAAAATATCACATTTTATTTGGTGGAAACTGCATGAGGTGTAAAGCATGGTGCCGTCTA
CCAGTGATTACACCTTGTAAACATCTATTATGCCTTGACTGTGTTTCTTTAGATAGCGAGAAGTGTACAATTTCTGGCTGTGGTAACTTG
TATGAGATGCAAAGTCCTGAAACACTGGCCCGTCCTGAAAATCCAAATCCAAAGTGGCCCGTTCCAAAGGATCTGATTGAGTTGCAACCA
TCTTATAAACAGGATGACTGGAATCCCGATTGGCAATCAACATCTAGCAGTAAAGTTGCTTATCTTGTTGGTAGATTAAAGGAAATAAAG
GAAGCTAATAGGATGATTATTATCTCTAACGAGGACAAAATTGTTGAGACTAGTGTATCTCATGTACATACTAGGATAAACAATTTCAGC
ATGTTTTCATCGCAGCAGTATTTGGTTGGGCCAGCAAATGATTTCTGCAATATAAATCCACAGAAAGTTATCATATTTTCTCAGTTTCTG
GAGCACATACATGTAATTGAACAGCAGTTAGCAATTGCTGGTATCAGTTTTGCCAGTTTGTATAGTCCAATGCCTTCCATTAGCAAGGTG
AAAGCACTGTTAACATTTCAGCATGATGTTGACTGCATGGCTCTTTTAATGGACGGAAGTGCAGCTTTAGGTCTTGATCTGAGCTTTGTG
ACACATGTTTATTTAATGGAGCCAATTTGGGACAAAAGTATGGAGGAACAGGTGATCAGTCGTGCTCATCGGATGGGTGCTACACGTCCT
ATTCTCGTGGAAACACTGGCGATGAGTGGCACAATTGAGGAGCAAATGATGAAGTTCTTACAGGAGGCTGATGAAGGTAGGAGGTTGTTG
AAGGAAGAATATGGTAAACTGGGTCATGATGGAGCACGAGCACCACGCACATTACATGATTTCGCTGAAAGCAATTATCTCACTCGCCTT
AACTTTGTTCGGACTAGTTCCAAGGCATGAAGGTGGACGATTCCATTGTTTTGATGAACTGGCACTGCAGGGTCTCGTCAATCGCTGACT
CTGGCAATCTATTCTGCCTTGCTGAGTTGTGCCAAGAGGCCCAAGACTATTTATGCTAGATAGTTGCTGCTTCTTTGATTATTGTTGCCC
ACCGGTGGAATCATTTTTATTCTTGCGGCATTGCAGAATTCAGGCATTCGGATGTGGCAACCTGATGATCTTCAAAGTCTGGCTTAGAAT
TGGTTGTAGATATTTATACATTTATTCTTCTTAGTCAGAGAAATTTCCCTAGTGTAGTATATCCTTGTCTTTTCCTTTTTTTGCATCTCT
CTAAGGAGAAAATACAGTTGTAGTGGCTGCTTCGAAAATAAGATATGGACCATTTTTACTGAATTTTGATCTGGAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1

mRNA member sequences (11)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101437	DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) SNF2-related - Molecular Function: DNA binding (GO:0003677) - Molecular Function: ATP binding (GO:0005524) Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524)	162
2	124761	Zinc finger CW-type - Molecular Function: zinc ion binding (GO:0008270) Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270) SNF2-related - Molecular Function: DNA binding (GO:0003677) - Molecular Function: ATP binding (GO:0005524) Cyclin-like F-box	3
5	135100	Zinc finger CW-type - Molecular Function: zinc ion binding (GO:0008270) Helicase C-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) DEAD/DEAH box helicase N-terminal - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: helicase activity (GO:0004386) - Molecular Function: ATP binding (GO:0005524) Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270) SNF2-related - Molecular Function: DNA binding (GO:0003677) - Molecular Function: ATP binding (GO:0005524) Cyclin-like F-box	3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U221940	Lycopersicon Combined #3
SGN-U227456	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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