Clone hba-250c18

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Clone
Clone name
hba-250c18
LE_HBa0250C18
C01HBa0250C18
P250C18
Clone type
BAC
Contamination
none
Estimated length
96,638
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this?None
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches)Not on Physical Map
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 1 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 1
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
157,582 bp
C01HBa0250C18.1
AC239651.3 (GenBank) 		[View]
End Sequences
None
Warnings
  • poor correspondence with in vitro restriction fragments
    (match score below 0.7)
  • sequence length 157,582 is 63.1% different from estimated length 96,638
 FTP
Chromosome 1 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (12)
3061, 3753, 4460, 6274, 6599, 6753, 6858, 7569, 8896, 12411, 14590, 15414
HindIII in silico (34)
1069, 1176, 1195, 1226, 1249, 1260, 1316, 1398, 1417, 1489, 1633, 1954, 2154, 2279, 2418, 2441, 2573, 3033, 3046, 3072, 3765, 4404, 4468, 5682, 6090, 6099, 6490, 6695, 6871, 7583, 8879, 12336, 13970, 14981
Fragment Lengths Match Score
0.56
Annotations  
Browse
LE_HBa0250C18 has no browsable sequence annotations
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Seq. Center Reported Status
Estimated Length
 and  bp
GenBank Accession (version insensitive)
e.g. AP009318.1 or AP009318
Sequencing on Chromosome
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Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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