Clone slm-56m13

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Clone
Clone name
slm-56m13
SL_MboI0056M13
C01SLm0056M13
Clone type
BAC
Contamination
none
Estimated length
67,840
Library
Name
Tomato MboI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pECBAC1
Accession
Heinz 1706
Restriction enzyme
MboI
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this?None
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches)Not on Physical Map
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 1 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 1
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
95,067 bp
C01SLm0056M13.1
AC243716.4 (GenBank) 		[View]
End Sequences
Warnings
  • sequence length 95,067 is 40.1% different from estimated length 67,840
 FTP
Chromosome 1 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (19)
1249, 1385, 1470, 1637, 1756, 2125, 2162, 2329, 2454, 2542, 2664, 3625, 3683, 4559, 4749, 4978, 5650, 7680, 11143
HindIII in silico (26)
1225, 1261, 1382, 1463, 1640, 1753, 2124, 2164, 2351, 2475, 2566, 2670, 2694, 3619, 3634, 3657, 4533, 4550, 4557, 4638, 4738, 4802, 4926, 4945, 5678, 10717
Fragment Lengths Match Score
0.85
Annotations  
Browse
SL_MboI0056M13 has no browsable sequence annotations
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Seq. Center Reported Status
Estimated Length
 and  bp
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e.g. AP009318.1 or AP009318
Sequencing on Chromosome
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Annotations
End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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