Clone slm-33j4

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Clone
Clone name
slm-33j4
SL_MboI0033J04
C01SLm0033J04
Clone type
BAC
Contamination
none
Estimated length
102,205
Library
Name
Tomato MboI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pECBAC1
Accession
Heinz 1706
Restriction enzyme
MboI
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this?None
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches)Not on Physical Map
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 1 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 1
HTGS phase
2 - fragmented, ordered
Sequencing Status
complete
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
160,206 bp
C01SLm0033J04.2
AC246635.4 (GenBank) 		[View]
End Sequences
Warnings
  • sequence is not finished to HTGS3
  • sequence length 160,206 is 56.7% different from estimated length 102,205
 FTP
Chromosome 1 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (28)
1102, 1345, 1426, 1496, 1634, 1837, 2001, 2370, 2489, 2548, 2778, 2873, 3113, 3334, 3380, 3555, 3746, 4093, 4307, 4404, 4623, 5273, 5485, 5617, 6009, 6203, 6553, 8611
HindIII in silico (44)
1005, 1097, 1099, 1320, 1343, 1415, 1423, 1500, 1610, 1637, 1825, 1966, 2013, 2397, 2506, 2522, 2538, 2569, 2607, 2800, 2866, 3108, 3110, 3330, 3336, 3384, 3414, 3581, 3783, 4104, 4131, 4292, 4348, 4398, 5310, 5550, 5627, 5681, 5745, 6019, 6177, 6203, 6499, 9847
Fragment Lengths Match Score
0.81
Annotations  
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SL_MboI0033J04 has no browsable sequence annotations
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End Sequences

e.g. crystallin
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Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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