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Expression Template: Les.119.1.S1_at

Template Basic Information

Template name:	Les.119.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U590435
External db links:	GenBank: AF218774.1

Annotations for unigene SGN-U590435 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|7263070\|gb\|AAF44085.1\|	581	3e-164	100	855 bp (91.2%)	2
Description:	putative water channel protein [Solanum lycopersicum]
arabidopsis	blastx	At4G23400.1	520	5e-148	88.07	849 bp (90.6%)	2
Description:	Symbols: PIP1D, PIP1;5 \| PIP1;5/PIP1D (plasma membrane intrinsic protein 1;5); water channel \|&hellip
swissprot	blastx	Q8LAA6	520	5e-147	88.07	849 bp (90.6%)	2
Description:	Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.119.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.119.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.119.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.119.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.119.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.119.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.119.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.119.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.119.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.119.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.119.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	927.16	927.16	279.18	0.30
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	432.02	435.24	7.05	0.02
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	2256.64	2198.53	109.73	0.05
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	383.92	383.92	167.34	0.44
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	405.46	392.29	28.97	0.07
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	405.80	405.80	56.00	0.14
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	179.57	187.55	29.25	0.16
	Gene expression data from Aft red fruit peel	exocarp	3	3	255.95	256.16	9.55	0.04
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	208.61	215.27	13.48	0.06
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	881.03	911.66	57.72	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	139.92	135.04	94.49	0.68
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	434.51	434.51	248.72	0.57
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	524.28	540.05	40.00	0.08
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	427.07	427.07	0.18	0.00
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	108.45	108.24	13.03	0.12
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	3060.31	3060.31	506.40	0.17
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	865.68	865.68	33.60	0.04
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1106.80	1099.00	48.94	0.04
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	888.82	893.53	33.38	0.04
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	252.16	238.64	30.28	0.12
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	522.21	513.98	35.37	0.07
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	212.45	176.64	166.79	0.79
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	201.15	165.38	97.01	0.48
	Gene expression data from Micro-Tom root	root	3	3	1445.35	1529.45	163.23	0.11

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	729.753	2e-4	P
	GSM480171 extract 1	1124.57	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	435.242	2e-4	P
	GSM480213 extract 1	423.935	2e-4	P
	GSM480214 extract 1	436.893	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	2188.19	2e-4	P
	GSM480216 extract 1	2383.2	2e-4	P
	GSM480215 extract 1	2198.53	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	265.589	2e-4	P
	GSM480186 extract 1	502.243	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	385.427	2e-4	P
	GSM480188 extract 1	392.287	2e-4	P
	GSM480189 extract 1	438.679	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	366.206	2e-4	P
	GSM480183 extract 1	445.397	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	147.166	0.001	P
	GSM480207 extract 1	187.548	7e-4	P
	GSM480208 extract 1	204.009	7e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	256.156	7e-4	P
	GSM480210 extract 1	246.3	7e-4	P
	GSM480209 extract 1	265.393	7e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	215.268	2e-4	P
	GSM480219 extract 1	217.463	2e-4	P
	GSM480220 extract 1	193.094	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	814.444	2e-4	P
	GSM480223 extract 1	911.657	2e-4	P
	GSM480221 extract 1	916.977	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	236.749	0.003	P
	GSM480191 extract 1	47.9608	0.024	P
	GSM480192 extract 1	135.043	0.004	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	610.385	2e-4	P
	GSM480195 extract 1	258.644	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	478.798	2e-4	P
	GSM480199 extract 1	553.986	2e-4	P
	GSM480198 extract 1	540.049	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	426.943	2e-4	P
	GSM480194 extract 1	427.2	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	102.083	0.001	P
	GSM480231 extract 1	114.387	2e-4	P
	GSM480228 extract 1	93.9395	0.001	P
	GSM480230 extract 1	123.386	7e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	2702.23	2e-4	P
	GSM480169 extract 1	3418.39	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	889.445	2e-4	P
	GSM480173 extract 1	841.923	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	1099	2e-4	P
	GSM480176 extract 1	1062.23	2e-4	P
	GSM480174 extract 1	1159.17	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	853.347	2e-4	P
	GSM480178 extract 1	893.528	2e-4	P
	GSM480179 extract 1	919.6	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	230.996	2e-4	P
	GSM480200 extract 1	238.639	2e-4	P
	GSM480201 extract 1	286.837	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	491.681	2e-4	P
	GSM480205 extract 1	513.984	2e-4	P
	GSM480203 extract 1	560.973	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	394.235	2e-4	P
	GSM480180 extract 1	176.641	2e-4	P
	GSM480181 extract 1	66.4764	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	129.878	2e-4	P
	GSM480226 extract 1	155.331	2e-4	P
	GSM480224 extract 1	175.439	2e-4	P
	GSM480227 extract 1	343.946	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	1257.22	2e-4	P
	GSM480167 extract 1	1549.38	2e-4	P
	GSM480166 extract 1	1529.45	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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