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Expression Template: Les.4483.1.S1_at

Template Basic Information

Template name:	Les.4483.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U583008
External db links:	GenBank: AY498713.1

Annotations for unigene SGN-U583008 (manual: 2 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLHT-24-K8, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "transcription factor, NAC domain" Annotation Keywords: transcription factor; DNA transcription; transcriptional regulation

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|40647397\|gb\|AAR88435.1\|	604	6e-171	100	903 bp (70.1%)	2
Description:	NAC domain protein [Solanum lycopersicum] >gi195549549\|gb\|ACG50002.1\| NAC domain protein 1 [Sol&hellip
arabidopsis	blastx	At1G01720.1	355	4e-98	61.59	882 bp (68.4%)	2
Description:	Symbols: ANAC002, ATAF1 \| ATAF1 (Arabidopsis NAC domain containing protein 2); transcription f&hellip
swissprot	blastx	Q39013	355	4e-97	61.59	882 bp (68.4%)	2
Description:	NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4483.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4483.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4483.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4483.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4483.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4483.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4483.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4483.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4483.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4483.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4483.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	2048.92	2048.92	2375.74	1.16
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	233.53	206.57	49.10	0.21
	Gene expression data from Aft red fruit flesh	endocarp	3	3	347.17	373.60	108.50	0.31
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	1462.86	1247.82	1226.10	0.84
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	278.25	278.25	79.98	0.29
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	807.56	807.56	838.00	1.04
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	176.01	183.50	14.16	0.08
	Gene expression data from Aft red fruit peel	exocarp	3	3	409.29	355.85	141.95	0.35
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	64.23	64.32	8.33	0.13
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	73.26	67.93	12.10	0.17
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1402.46	1066.83	950.29	0.68
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	206.52	206.52	73.11	0.35
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	999.60	673.67	581.76	0.58
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	334.84	334.84	325.37	0.97
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	2165.33	2606.58	1248.75	0.58
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1639.29	1639.29	1812.53	1.11
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	2043.12	2043.12	334.98	0.16
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	182.82	231.06	101.51	0.56
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	115.05	132.46	62.24	0.54
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	92.72	103.88	24.49	0.26
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	64.98	64.37	5.68	0.09
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	879.18	755.36	275.49	0.31
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	1919.14	2293.82	997.19	0.52
	Gene expression data from Micro-Tom root	root	3	3	1259.71	1204.98	160.79	0.13

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	369.022	2e-4	P
	GSM480170 extract 1	3728.82	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	203.807	2e-4	P
	GSM480201 extract 1	206.572	2e-4	P
	GSM480202 extract 1	290.197	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	440.014	2e-4	P
	GSM480204 extract 1	227.894	2e-4	P
	GSM480205 extract 1	373.6	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	2782.25	2e-4	P
	GSM480182 extract 1	1247.82	2e-4	P
	GSM480181 extract 1	358.501	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	221.69	2e-4	P
	GSM480185 extract 1	334.805	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1400.12	2e-4	P
	GSM480184 extract 1	215.002	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	184.845	2e-4	P
	GSM480208 extract 1	183.497	2e-4	P
	GSM480206 extract 1	159.679	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	570.207	2e-4	P
	GSM480209 extract 1	355.851	2e-4	P
	GSM480210 extract 1	301.822	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	64.3212	2e-4	P
	GSM480218 extract 1	72.52	2e-4	P
	GSM480219 extract 1	55.8579	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	64.7382	0.004	P
	GSM480222 extract 1	67.9268	0.002	P
	GSM480223 extract 1	87.1029	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	665.539	2e-4	P
	GSM480192 extract 1	1066.83	2e-4	P
	GSM480190 extract 1	2475.02	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	258.221	2e-4	P
	GSM480196 extract 1	154.829	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	1671.26	2e-4	P
	GSM480197 extract 1	673.673	2e-4	P
	GSM480198 extract 1	653.872	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	564.914	2e-4	P
	GSM480194 extract 1	104.775	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	3120.37	2e-4	P
	GSM480229 extract 1	2600.55	2e-4	P
	GSM480230 extract 1	2612.61	2e-4	P
	GSM480231 extract 1	327.794	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	2920.94	2e-4	P
	GSM480169 extract 1	357.632	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1806.25	2e-4	P
	GSM480173 extract 1	2279.99	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	231.063	2e-4	P
	GSM480176 extract 1	66.1829	2e-4	P
	GSM480174 extract 1	251.221	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	45.9566	2e-4	P
	GSM480178 extract 1	132.463	2e-4	P
	GSM480177 extract 1	166.726	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	109.645	2e-4	P
	GSM480213 extract 1	64.6432	2e-4	P
	GSM480214 extract 1	103.885	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	64.3743	7e-4	P
	GSM480217 extract 1	70.9462	2e-4	P
	GSM480215 extract 1	59.6254	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	755.359	2e-4	P
	GSM480188 extract 1	687.329	2e-4	P
	GSM480189 extract 1	1194.85	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	2455.14	2e-4	P
	GSM480225 extract 1	2632.94	2e-4	P
	GSM480226 extract 1	2132.51	2e-4	P
	GSM480227 extract 1	455.986	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	1133.44	2e-4	P
	GSM480166 extract 1	1204.98	2e-4	P
	GSM480165 extract 1	1440.72	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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