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Expression Template: Les.243.1.S1_at

Template Basic Information

Template name:	Les.243.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U579774 SGN-U579774
External db links:	GenBank: AB040043.1

Annotations for unigene SGN-U579774 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|7259354\|dbj\|BAA92782.1\|	330	1e-88	100	549 bp (56.2%)	1
Description:	nonclathrin coat protein zeta2-COP [Solanum lycopersicum]
arabidopsis	blastx	At1G60970.1	243	2e-64	75.72	519 bp (53.2%)	1
Description:	clathrin adaptor complex small chain family protein \| chr1:22451673-22453052 REVERSE
swissprot	blastx	Q940S5	243	2e-63	75.72	519 bp (53.2%)	1
Description:	Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Annotations for unigene SGN-U579774 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|7259354\|dbj\|BAA92782.1\|	330	1e-88	100	549 bp (56.2%)	1
Description:	nonclathrin coat protein zeta2-COP [Solanum lycopersicum]
arabidopsis	blastx	At1G60970.1	243	2e-64	75.72	519 bp (53.2%)	1
Description:	clathrin adaptor complex small chain family protein \| chr1:22451673-22453052 REVERSE
swissprot	blastx	Q940S5	243	2e-63	75.72	519 bp (53.2%)	1
Description:	Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.243.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.243.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.243.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.243.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.243.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.243.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.243.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.243.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.243.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.243.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.243.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	530.37	530.37	29.63	0.06
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	282.65	301.20	33.79	0.12
	Gene expression data from Aft red fruit flesh	endocarp	3	3	165.92	171.86	16.34	0.10
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	198.23	196.78	7.57	0.04
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	100.24	98.43	6.36	0.06
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	729.26	690.21	160.23	0.22
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	664.19	664.19	206.44	0.31
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	405.05	362.61	82.75	0.20
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	322.71	342.26	70.36	0.22
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	199.29	217.47	34.89	0.18
	Gene expression data from Aft red fruit peel	exocarp	3	3	254.95	249.84	34.25	0.13
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	180.98	178.13	14.54	0.08
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	55.40	53.84	5.91	0.11
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	678.52	535.24	293.51	0.43
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	338.71	338.71	200.50	0.59
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	170.52	177.35	21.74	0.13
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	422.94	422.94	128.72	0.30
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	209.10	208.77	23.98	0.11
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1002.82	1002.82	212.46	0.21
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	447.87	447.87	37.13	0.08
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	404.16	393.38	36.69	0.09
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	483.04	444.38	87.14	0.18
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	694.67	694.67	126.48	0.18
	Gene expression data from Micro-Tom root	root	3	3	1274.12	1302.76	87.07	0.07

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	509.416	2e-4	P
	GSM480170 extract 1	551.32	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	301.2	2e-4	P
	GSM480200 extract 1	303.103	2e-4	P
	GSM480202 extract 1	243.646	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	171.865	2e-4	P
	GSM480203 extract 1	178.452	2e-4	P
	GSM480204 extract 1	147.436	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	206.421	2e-4	P
	GSM480213 extract 1	191.484	2e-4	P
	GSM480212 extract 1	196.776	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	98.4295	2e-4	P
	GSM480217 extract 1	107.311	2e-4	P
	GSM480216 extract 1	94.979	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	690.211	2e-4	P
	GSM480182 extract 1	592.164	2e-4	P
	GSM480180 extract 1	905.399	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	810.17	2e-4	P
	GSM480186 extract 1	518.215	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	352.13	2e-4	P
	GSM480188 extract 1	500.41	2e-4	P
	GSM480189 extract 1	362.608	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	326.369	2e-4	P
	GSM480227 extract 1	223.109	2e-4	P
	GSM480224 extract 1	358.156	2e-4	P
	GSM480225 extract 1	383.205	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	217.467	2e-4	P
	GSM480207 extract 1	159.061	2e-4	P
	GSM480208 extract 1	221.341	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	291.462	2e-4	P
	GSM480211 extract 1	249.844	2e-4	P
	GSM480209 extract 1	223.542	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	196.739	2e-4	P
	GSM480220 extract 1	168.075	2e-4	P
	GSM480218 extract 1	178.127	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	61.9349	0.001	P
	GSM480223 extract 1	53.8387	7e-4	P
	GSM480221 extract 1	50.4357	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	535.235	2e-4	P
	GSM480192 extract 1	484.175	2e-4	P
	GSM480190 extract 1	1016.15	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	196.935	2e-4	P
	GSM480195 extract 1	480.485	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	177.348	2e-4	P
	GSM480199 extract 1	146.192	2e-4	P
	GSM480198 extract 1	188.027	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	513.958	2e-4	P
	GSM480194 extract 1	331.914	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	220.491	2e-4	P
	GSM480231 extract 1	182.503	2e-4	P
	GSM480228 extract 1	197.045	2e-4	P
	GSM480229 extract 1	236.354	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	852.586	2e-4	P
	GSM480168 extract 1	1153.05	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	474.128	2e-4	P
	GSM480172 extract 1	421.615	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	445.032	2e-4	P
	GSM480175 extract 1	393.385	2e-4	P
	GSM480176 extract 1	374.065	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	421.924	2e-4	P
	GSM480178 extract 1	444.377	2e-4	P
	GSM480179 extract 1	582.82	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	784.109	2e-4	P
	GSM480184 extract 1	605.235	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	1302.76	2e-4	P
	GSM480167 extract 1	1343.26	2e-4	P
	GSM480166 extract 1	1176.34	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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