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Expression Template: Les.5951.1.S1_at

Template Basic Information

Template name:	Les.5951.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U570596
External db links:	GenBank: AY725475.1

Annotations for unigene SGN-U570596 (manual: 1 | blast: 3 | go: 7 )

Manual annotations

Based on clone cLEC-31-P18, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: malate dehydrogenase Annotation Keywords: energy pathways; carbohydrate metabolism; citric acid cycle; malate metabolism

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|52139818\|gb\|AAU29199.1\|	643		100	1002 bp (78.5%)	2
Description:	cytosolic malate dehydrogenase [Solanum lycopersicum]
arabidopsis	blastx	At5G43330.1	541	3e-154	84.55	990 bp (77.6%)	2
Description:	malate dehydrogenase, cytosolic, putative \| chr5:17407780-17409677 FORWARD
swissprot	blastx	Q7XDC8	560	6e-159	86.97	990 bp (77.6%)	2
Description:	Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3

GO Terms Annotations

GO:0006096glycolysis
GO:0030060L-malate dehydrogenase activity
GO:0006108malate metabolism
GO:0006100tricarboxylic acid cycle intermediate metabolism
GO:0004459L-lactate dehydrogenase activity
GO:0016615malate dehydrogenase activity
GO:0016491oxidoreductase activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.5951.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.5951.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.5951.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.5951.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.5951.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.5951.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.5951.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.5951.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.5951.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.5951.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.5951.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	63.58	63.58	7.53	0.12
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	12.13	11.66	1.14	0.09
	Gene expression data from Aft red fruit flesh	endocarp	3	3	1.58	1.06	1.52	0.96
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	30.55	30.58	2.71	0.09
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	5.07	6.50	3.16	0.62
	Gene expression data from Aft red fruit peel	exocarp	3	3	0.92	0.93	0.46	0.50
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	2.15	0.97	2.15	1.00
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	5.18	3.20	5.16	1.00
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	4.69	4.51	3.45	0.74
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1.08	1.08	0.77	0.72
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	3.93	4.45	1.40	0.36
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	3.62	3.62	2.39	0.66
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	5.53	5.39	4.78	0.86
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	73.36	73.36	12.25	0.17
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	53.43	53.43	0.22	0.00
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	55.74	53.81	4.04	0.07
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	52.33	49.52	7.16	0.14
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	14.03	16.03	4.03	0.29
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	6.12	5.89	1.05	0.17
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	4.74	4.74	4.69	0.99
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	15.54	18.12	4.55	0.29
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	3.50	3.50	2.70	0.77
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	6.87	7.17	5.01	0.73
	Gene expression data from Micro-Tom root	root	3	3	48.70	49.17	6.97	0.14

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	58.256	0.001	P
	GSM480171 extract 1	68.9069	0.004	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	11.2998	0.150	A
	GSM480202 extract 1	13.4307	0.056	M
	GSM480200 extract 1	11.6636	0.068	A
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	0.391959	0.932	A
	GSM480205 extract 1	3.29873	0.534	A
	GSM480204 extract 1	1.0642	0.905	A
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	33.2328	0.002	P
	GSM480216 extract 1	30.5801	0.006	P
	GSM480217 extract 1	27.8225	0.038	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	6.49999	0.150	A
	GSM480206 extract 1	1.4426	0.500	A
	GSM480208 extract 1	7.26125	0.195	A
Gene expression data from Aft red fruit peel	GSM480211 extract 1	0.456667	0.466	A
	GSM480209 extract 1	1.37505	0.870	A
	GSM480210 extract 1	0.925974	0.829	A
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	4.63502	0.334	A
	GSM480220 extract 1	0.968867	0.726	A
	GSM480218 extract 1	0.854064	0.696	A
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	11.0424	0.068	A
	GSM480222 extract 1	1.31018	0.850	A
	GSM480221 extract 1	3.19941	0.625	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	1.33667	0.726	A
	GSM480191 extract 1	4.50513	0.399	A
	GSM480192 extract 1	8.23567	0.246	A
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	0.534334	0.601	A
	GSM480196 extract 1	1.62794	0.568	A
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	2.33772	0.634	A
	GSM480199 extract 1	4.98684	0.304	A
	GSM480197 extract 1	4.45099	0.171	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	5.30624	0.366	A
	GSM480193 extract 1	1.92394	0.500	A
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	10.8494	0.081	A
	GSM480230 extract 1	2.65347	0.601	A
	GSM480231 extract 1	0.497159	0.634	A
	GSM480229 extract 1	8.12455	0.568	A
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	82.0189	2e-4	P
	GSM480168 extract 1	64.7015	0.003	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	53.5829	0.002	P
	GSM480172 extract 1	53.2723	0.003	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	60.3809	0.002	P
	GSM480176 extract 1	53.0234	0.008	P
	GSM480175 extract 1	53.8124	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	47.0036	0.003	P
	GSM480177 extract 1	49.5177	0.003	P
	GSM480179 extract 1	60.4636	0.001	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	16.0297	0.046	P
	GSM480212 extract 1	9.39493	0.068	A
	GSM480213 extract 1	16.6795	0.068	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	5.89386	0.366	A
	GSM480180 extract 1	5.19667	0.095	A
	GSM480181 extract 1	7.26269	0.399	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	1.42363	0.601	A
	GSM480185 extract 1	8.05556	0.219	A
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	18.1181	0.030	P
	GSM480187 extract 1	18.2172	0.095	A
	GSM480188 extract 1	10.2858	0.219	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	5.41048	0.334	A
	GSM480184 extract 1	1.59125	0.601	A
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	1.8573	0.568	A
	GSM480227 extract 1	3.2766	0.274	A
	GSM480226 extract 1	11.285	0.019	P
	GSM480225 extract 1	11.0733	0.171	A
Gene expression data from Micro-Tom root	GSM480165 extract 1	55.4243	7e-4	P
	GSM480166 extract 1	49.1689	2e-4	P
	GSM480167 extract 1	41.4988	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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