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Expression Template: Les.4524.1.S1_at

Template Basic Information

Template name:	Les.4524.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U565963
External db links:	GenBank: AY530758.1

Annotations for unigene SGN-U565963 (manual: 1 | blast: 2 | go: 6 )

Manual annotations

Based on clone cLEF-41-I7, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "transcription factor, bZIP, ripening-related" Annotation Keywords: transcription factor; DNA transcription; transcriptional regulation

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|42561991\|gb\|AAS20434.1\|	715		100	1341 bp (82.0%)	1
Description:	AREB-like protein [Solanum lycopersicum]
arabidopsis	blastx	At1G45249.1	347	2e-95	55.68	1248 bp (76.3%)	1
Description:	Symbols: AREB1, ABF2 \| ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2) \| chr1:171678&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

GO:0006355regulation of transcription, DNA-dependent
GO:0003700transcription factor activity
GO:0043565sequence-specific DNA binding
GO:0046983protein dimerization activity
GO:0005634nucleus
GO:0003677DNA binding

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4524.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4524.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4524.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4524.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4524.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4524.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4524.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4524.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4524.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4524.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4524.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	47.76	47.76	18.53	0.39
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	127.89	124.87	6.21	0.05
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	182.17	176.93	19.35	0.11
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	146.43	149.85	31.83	0.22
	Gene expression data from Aft red fruit peel	exocarp	3	3	89.81	90.87	9.61	0.11
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	186.71	174.94	26.22	0.14
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	124.12	119.20	25.53	0.21
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	159.44	190.56	85.34	0.54
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	55.26	55.26	15.00	0.27
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	93.33	85.55	22.98	0.25
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	43.97	43.97	11.64	0.26
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	143.84	143.77	35.58	0.25
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	61.63	61.63	18.40	0.30
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	36.72	36.72	9.88	0.27
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	113.57	110.81	46.81	0.41
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	33.65	31.33	6.29	0.19
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	116.28	122.52	19.48	0.17
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	123.96	123.01	6.79	0.05
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	167.72	160.31	36.41	0.22
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	77.53	77.53	18.37	0.24
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	109.77	113.89	22.30	0.20
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	53.41	53.41	6.58	0.12
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	156.15	149.77	25.43	0.16
	Gene expression data from Micro-Tom root	root	3	3	68.90	69.17	15.58	0.23

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	60.8609	7e-4	P
	GSM480171 extract 1	34.6596	0.004	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	124.874	2e-4	P
	GSM480214 extract 1	135.032	2e-4	P
	GSM480212 extract 1	123.76	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	203.598	2e-4	P
	GSM480215 extract 1	165.975	2e-4	P
	GSM480217 extract 1	176.928	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	176.414	2e-4	P
	GSM480208 extract 1	149.85	2e-4	P
	GSM480206 extract 1	113.026	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	90.8745	2e-4	P
	GSM480209 extract 1	98.8484	2e-4	P
	GSM480211 extract 1	79.707	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	216.751	2e-4	P
	GSM480218 extract 1	174.944	2e-4	P
	GSM480219 extract 1	168.446	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	151.746	2e-4	P
	GSM480223 extract 1	119.197	2e-4	P
	GSM480221 extract 1	101.406	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	62.9084	2e-4	P
	GSM480191 extract 1	190.562	2e-4	P
	GSM480192 extract 1	224.856	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	44.6568	0.003	P
	GSM480195 extract 1	65.867	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	85.547	2e-4	P
	GSM480198 extract 1	119.193	2e-4	P
	GSM480199 extract 1	75.2458	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	35.7363	0.002	P
	GSM480194 extract 1	52.1957	7e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	185.723	2e-4	P
	GSM480228 extract 1	102.103	7e-4	P
	GSM480229 extract 1	156.032	2e-4	P
	GSM480230 extract 1	131.508	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	48.6182	7e-4	P
	GSM480168 extract 1	74.6467	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	29.7305	0.006	P
	GSM480172 extract 1	43.7	0.003	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	110.809	2e-4	P
	GSM480175 extract 1	161.702	2e-4	P
	GSM480176 extract 1	68.2042	7e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	40.7731	7e-4	P
	GSM480179 extract 1	28.8511	0.008	P
	GSM480178 extract 1	31.3331	0.001	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	94.4503	2e-4	P
	GSM480200 extract 1	122.525	2e-4	P
	GSM480201 extract 1	131.869	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	131.184	2e-4	P
	GSM480204 extract 1	117.696	2e-4	P
	GSM480205 extract 1	123.012	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	207.267	2e-4	P
	GSM480180 extract 1	135.595	2e-4	P
	GSM480182 extract 1	160.308	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	90.5227	2e-4	P
	GSM480186 extract 1	64.5387	0.002	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	129.715	2e-4	P
	GSM480189 extract 1	85.6929	2e-4	P
	GSM480188 extract 1	113.893	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	48.7568	0.001	P
	GSM480184 extract 1	58.0618	0.002	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	191.872	0.001	P
	GSM480226 extract 1	154.975	2e-4	P
	GSM480224 extract 1	144.559	7e-4	P
	GSM480227 extract 1	133.178	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	84.3487	2e-4	P
	GSM480166 extract 1	69.1733	2e-4	P
	GSM480167 extract 1	53.1846	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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