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Expression Template: Les.234.1.S1_at

Template Basic Information

Template name:	Les.234.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U579176
External db links:	GenBank: AF017144.2

Annotations for unigene SGN-U579176 (manual: 0 | blast: 3 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|75219453\|sp\|O48540\|MAN1_SOLLC	819		100	1191 bp (70.6%)	1
Description:	Mannan
arabidopsis	blastx	At5G66460.1	430	1e-120	52.27	1113 bp (66.0%)	1
Description:	(1-4)-beta-mannan endohydrolase, putative \| chr5:26556137-26558063 REVERSE
swissprot	blastx	O48540	819		100	1191 bp (70.6%)	1
Description:	Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lycopersicum GN=MAN1 PE=1 SV=2

GO Terms Annotations

GO:0005975carbohydrate metabolism
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003824catalytic activity
GO:0043169cation binding

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.234.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.234.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.234.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.234.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.234.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.234.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.234.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.234.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.234.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.234.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.234.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	9.52	9.52	3.52	0.37
	Gene expression data from Aft red fruit flesh	endocarp	3	3	5.94	5.97	2.92	0.49
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	7.43	6.17	7.64	1.03
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	6.20	5.23	3.00	0.48
	Gene expression data from Aft red fruit peel	exocarp	3	3	5.49	6.36	1.67	0.30
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	5.22	6.07	1.62	0.31
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	9.89	11.52	8.44	0.85
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	7.07	7.82	6.46	0.91
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	11.14	11.14	2.70	0.24
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	5.39	5.05	2.42	0.45
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	5.43	5.43	4.47	0.82
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	8.67	7.76	4.45	0.51
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	9.44	9.44	2.70	0.29
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	4.75	4.75	4.11	0.86
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	12.66	12.08	2.56	0.20
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	7.08	7.30	1.06	0.15
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	14.33	14.86	0.93	0.06
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	9.40	8.72	2.71	0.29
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	10.39	10.14	1.89	0.18
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	10.42	10.42	5.37	0.52
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	7.67	8.15	5.56	0.73
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	3.43	3.43	3.91	1.14
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	12.25	12.98	4.47	0.36
	Gene expression data from Micro-Tom root	root	3	3	7.75	7.12	2.38	0.31

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	7.03656	0.081	A
	GSM480171 extract 1	12.0128	0.018	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	3.00606	0.171	A
	GSM480204 extract 1	5.96995	0.171	A
	GSM480205 extract 1	8.85091	0.038	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	6.16733	0.195	A
	GSM480215 extract 1	0.50365	0.754	A
	GSM480216 extract 1	15.6289	0.014	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	5.23171	0.150	A
	GSM480207 extract 1	3.80326	0.112	A
	GSM480208 extract 1	9.5663	0.019	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	6.35998	0.056	M
	GSM480211 extract 1	6.54026	0.112	A
	GSM480209 extract 1	3.56667	0.150	A
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	6.0659	0.038	P
	GSM480219 extract 1	6.24481	0.081	A
	GSM480220 extract 1	3.35187	0.246	A
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	0.754289	0.432	A
	GSM480222 extract 1	11.5246	0.023	P
	GSM480223 extract 1	17.3873	0.006	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	7.81981	0.112	A
	GSM480191 extract 1	13.1254	0.056	M
	GSM480192 extract 1	0.271289	0.334	A
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	9.23282	0.068	A
	GSM480196 extract 1	13.0533	0.024	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	7.96002	0.068	A
	GSM480199 extract 1	5.04996	0.112	A
	GSM480197 extract 1	3.15895	0.366	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	8.58673	0.030	P
	GSM480194 extract 1	2.26839	0.150	A
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	4.29523	0.171	A
	GSM480229 extract 1	7.34811	0.304	A
	GSM480230 extract 1	14.8494	0.068	A
	GSM480231 extract 1	8.18173	0.038	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	7.52456	0.171	A
	GSM480169 extract 1	11.3497	0.030	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1.84816	0.304	A
	GSM480173 extract 1	7.65913	0.081	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	15.4545	0.046	P
	GSM480175 extract 1	10.4367	0.068	A
	GSM480176 extract 1	12.0784	0.019	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	8.01599	0.056	M
	GSM480177 extract 1	5.93293	0.219	A
	GSM480178 extract 1	7.29561	0.107	A
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	14.8637	0.004	P
	GSM480200 extract 1	13.2618	0.081	A
	GSM480201 extract 1	14.8781	0.046	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	8.72103	0.130	A
	GSM480214 extract 1	7.09587	0.081	A
	GSM480212 extract 1	12.3872	0.095	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	12.3905	0.068	A
	GSM480181 extract 1	8.63157	0.030	P
	GSM480182 extract 1	10.1416	0.068	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	14.2183	0.030	P
	GSM480186 extract 1	6.62295	0.056	M
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	12.9747	0.014	P
	GSM480188 extract 1	8.14701	0.046	P
	GSM480189 extract 1	1.88538	0.399	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	6.18997	0.002	P
	GSM480183 extract 1	0.661618	0.666	A
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	14.5949	0.095	A
	GSM480226 extract 1	11.3579	0.056	M
	GSM480224 extract 1	16.6624	0.011	P
	GSM480227 extract 1	6.40117	0.095	A
Gene expression data from Micro-Tom root	GSM480165 extract 1	7.12475	0.112	A
	GSM480166 extract 1	5.75002	0.304	A
	GSM480167 extract 1	10.3897	0.011	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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