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Expression Template: Les.4452.1.S1_at

Template Basic Information

Template name:	Les.4452.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U600185
External db links:	GenBank: AY348872.1

Annotations for unigene SGN-U600185 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|33867697\|gb\|AAQ55183.1\|	982		100	1518 bp (90.6%)	2
Description:	putative anthocyanin permease [Solanum lycopersicum]
arabidopsis	blastx	At4G25640.1	676		73.28	1392 bp (83.1%)	2
Description:	MATE efflux family protein \| chr4:13076962-13078974 REVERSE
swissprot	blastx	Q9LYT3	358	7e-98	41.83	1368 bp (81.7%)	2
Description:	Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4452.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4452.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4452.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4452.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4452.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4452.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4452.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4452.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4452.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4452.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4452.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	43.72	43.72	37.20	0.85
	Gene expression data from Aft red fruit flesh	endocarp	3	3	6.48	6.60	2.37	0.37
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	2.57	2.57	2.09	0.81
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	9.23	8.02	7.72	0.84
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	48.71	46.21	11.85	0.24
	Gene expression data from Aft red fruit peel	exocarp	3	3	7.05	6.67	1.18	0.17
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	4.71	5.94	3.69	0.78
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	5.28	6.58	3.22	0.61
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	3.51	0.91	4.95	1.41
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	6.67	6.67	8.70	1.30
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2.77	2.89	0.86	0.31
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	8.29	8.29	4.11	0.50
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	5.77	6.03	2.44	0.42
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	47.27	47.27	40.42	0.86
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	22.74	22.74	7.68	0.34
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	227.96	218.46	49.36	0.22
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	119.95	119.73	35.65	0.30
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	4.22	4.11	3.79	0.90
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	6.91	8.14	5.02	0.73
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	3.41	4.18	2.22	0.65
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	4.04	3.58	1.17	0.29
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	4.35	4.35	5.60	1.29
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	3.47	3.97	3.04	0.87
	Gene expression data from Micro-Tom root	root	3	3	3.57	2.76	3.70	1.04

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	70.0219	2e-4	P
	GSM480170 extract 1	17.4152	0.006	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	4.04999	0.466	A
	GSM480203 extract 1	6.59841	0.219	A
	GSM480204 extract 1	8.77793	0.399	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	4.04683	0.432	A
	GSM480183 extract 1	1.0934	0.634	A
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	13.1092	0.068	A
	GSM480227 extract 1	2.93414	0.304	A
	GSM480224 extract 1	2.64368	0.399	A
	GSM480225 extract 1	18.2146	0.030	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	38.3191	0.001	P
	GSM480207 extract 1	46.2086	7e-4	P
	GSM480208 extract 1	61.6166	7e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	6.11364	0.304	A
	GSM480210 extract 1	6.66693	0.195	A
	GSM480211 extract 1	8.38171	0.068	A
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	0.555727	0.634	A
	GSM480219 extract 1	7.62832	0.171	A
	GSM480220 extract 1	5.94272	0.304	A
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	1.61366	0.534	A
	GSM480222 extract 1	7.6504	0.334	A
	GSM480223 extract 1	6.57748	0.171	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	9.21817	0.130	A
	GSM480190 extract 1	0.910434	0.634	A
	GSM480191 extract 1	0.392856	0.754	A
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	0.519837	0.568	A
	GSM480195 extract 1	12.8282	0.274	A
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	2.88654	0.334	A
	GSM480198 extract 1	1.85591	0.601	A
	GSM480199 extract 1	3.57018	0.267	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	11.1962	0.130	A
	GSM480194 extract 1	5.38655	0.195	A
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	8.48912	0.399	A
	GSM480231 extract 1	2.55454	0.500	A
	GSM480228 extract 1	5.86762	0.399	A
	GSM480229 extract 1	6.18649	0.274	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	18.6844	0.014	P
	GSM480169 extract 1	75.85	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	28.1709	0.002	P
	GSM480173 extract 1	17.31	0.004	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	218.465	2e-4	P
	GSM480174 extract 1	281.386	2e-4	P
	GSM480175 extract 1	184.044	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	155.707	2e-4	P
	GSM480178 extract 1	119.729	2e-4	P
	GSM480179 extract 1	84.4099	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	4.1075	0.466	A
	GSM480202 extract 1	8.05959	0.219	A
	GSM480200 extract 1	0.480962	0.424	A
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	11.2084	0.068	A
	GSM480214 extract 1	8.13839	0.195	A
	GSM480212 extract 1	1.39722	0.726	A
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	5.1427	0.432	A
	GSM480215 extract 1	4.18075	0.534	A
	GSM480216 extract 1	0.902108	0.534	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	5.36902	0.432	A
	GSM480181 extract 1	3.57528	0.334	A
	GSM480182 extract 1	3.17725	0.500	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	0.386465	0.696	A
	GSM480186 extract 1	8.30596	0.150	A
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	0.219261	0.726	A
	GSM480189 extract 1	3.97136	0.500	A
	GSM480187 extract 1	6.22771	0.334	A
Gene expression data from Micro-Tom root	GSM480167 extract 1	7.61792	0.068	A
	GSM480166 extract 1	2.76107	0.399	A
	GSM480165 extract 1	0.344572	0.500	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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