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Expression Template: Les.3960.1.S1_at

Template Basic Information

Template name:	Les.3960.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U579470
External db links:	GenBank: AF545063.1

Annotations for unigene SGN-U579470 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEM-6-F21, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: senescence-associated protein Annotation Keywords: senescence

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|24850453\|gb\|AAN64920.1\|	865		100	1287 bp (80.0%)	2
Description:	putative dehydrogenase [Solanum lycopersicum]
arabidopsis	blastx	At3G17810.1	660		76.92	1287 bp (80.0%)	2
Description:	dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein \| chr3:609&hellip
swissprot	blastx	P25889	254	1e-66	41.76	1020 bp (63.4%)	2
Description:	Uncharacterized protein yeiA OS=Escherichia coli (strain K12) GN=yeiA PE=3 SV=3

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3960.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.3960.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.3960.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.3960.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.3960.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.3960.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.3960.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.3960.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.3960.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.3960.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.3960.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	416.12	416.12	83.80	0.20
	Gene expression data from Aft red fruit flesh	endocarp	3	3	1013.24	1025.33	40.40	0.04
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	881.27	909.28	51.50	0.06
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	1225.71	1244.78	61.21	0.05
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	832.62	779.52	175.82	0.21
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	911.92	912.15	13.22	0.01
	Gene expression data from Aft red fruit peel	exocarp	3	3	1126.23	1124.67	42.55	0.04
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	861.35	870.24	15.84	0.02
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1132.52	1143.71	28.88	0.03
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	829.03	756.40	203.09	0.24
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1039.91	1039.91	38.38	0.04
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1198.86	1254.12	107.81	0.09
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1065.32	1065.32	38.63	0.04
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	653.49	602.91	128.57	0.20
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	461.69	461.69	82.09	0.18
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	797.60	797.60	51.32	0.06
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	803.97	769.32	71.05	0.09
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	726.97	683.62	80.85	0.11
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	970.11	985.04	130.58	0.13
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	1012.75	965.12	114.93	0.11
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	1099.59	1099.59	111.72	0.10
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	1174.50	1146.09	57.78	0.05
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	1291.33	1291.33	17.21	0.01
	Gene expression data from Micro-Tom root	root	3	3	1425.86	1405.13	50.41	0.04

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	356.862	2e-4	P
	GSM480171 extract 1	475.38	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	968.165	2e-4	P
	GSM480205 extract 1	1046.21	2e-4	P
	GSM480204 extract 1	1025.33	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	912.697	2e-4	P
	GSM480214 extract 1	821.829	2e-4	P
	GSM480212 extract 1	909.277	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	1157.23	2e-4	P
	GSM480216 extract 1	1244.78	2e-4	P
	GSM480215 extract 1	1275.12	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	772.703	2e-4	P
	GSM480225 extract 1	684.029	2e-4	P
	GSM480227 extract 1	1087.42	2e-4	P
	GSM480226 extract 1	786.337	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	898.58	2e-4	P
	GSM480207 extract 1	912.146	2e-4	P
	GSM480208 extract 1	925.023	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	1169.53	2e-4	P
	GSM480210 extract 1	1124.67	2e-4	P
	GSM480211 extract 1	1084.48	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	870.74	2e-4	P
	GSM480220 extract 1	843.06	2e-4	P
	GSM480219 extract 1	870.239	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	1143.71	2e-4	P
	GSM480223 extract 1	1154.12	2e-4	P
	GSM480222 extract 1	1099.72	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	1058.45	2e-4	P
	GSM480192 extract 1	756.404	2e-4	P
	GSM480190 extract 1	672.229	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	1067.05	2e-4	P
	GSM480196 extract 1	1012.77	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	1254.12	2e-4	P
	GSM480197 extract 1	1074.62	2e-4	P
	GSM480199 extract 1	1267.83	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1092.64	2e-4	P
	GSM480194 extract 1	1038.01	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	565.271	2e-4	P
	GSM480228 extract 1	582.518	2e-4	P
	GSM480231 extract 1	842.86	2e-4	P
	GSM480230 extract 1	623.31	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	519.733	2e-4	P
	GSM480168 extract 1	403.643	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	833.89	2e-4	P
	GSM480172 extract 1	761.313	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	769.32	2e-4	P
	GSM480176 extract 1	885.687	2e-4	P
	GSM480175 extract 1	756.89	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	683.62	2e-4	P
	GSM480178 extract 1	677.042	2e-4	P
	GSM480179 extract 1	820.246	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	832.712	2e-4	P
	GSM480200 extract 1	1092.59	2e-4	P
	GSM480201 extract 1	985.042	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	929.299	2e-4	P
	GSM480181 extract 1	1143.84	2e-4	P
	GSM480182 extract 1	965.121	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1178.59	2e-4	P
	GSM480186 extract 1	1020.59	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	1136.43	2e-4	P
	GSM480188 extract 1	1240.99	2e-4	P
	GSM480189 extract 1	1146.09	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	1303.5	2e-4	P
	GSM480183 extract 1	1279.16	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	1483.33	2e-4	P
	GSM480166 extract 1	1405.13	2e-4	P
	GSM480167 extract 1	1389.13	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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