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Expression Template: Les.4012.1.S1_at

Template Basic Information

Template name:	Les.4012.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U581109 SGN-U581109
External db links:	GenBank: AI490784

Annotations for unigene SGN-U581109 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|76573319\|gb\|ABA46764.1\|	357	1e-96	99.48	582 bp (57.6%)	1
Description:	unknown [Solanum tuberosum]
arabidopsis	blastx	At3G49010.3	314	5e-86	84.46	579 bp (57.3%)	1
Description:	Symbols: BBC1, RSU2 \| ATBBC1 (breast basic conserved 1); structural constituent of ribosome \| &hellip
swissprot	blastx	P41127	314	4e-85	84.46	579 bp (57.3%)	1
Description:	60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Annotations for unigene SGN-U581109 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|76573319\|gb\|ABA46764.1\|	357	1e-96	99.48	582 bp (57.6%)	1
Description:	unknown [Solanum tuberosum]
arabidopsis	blastx	At3G49010.3	314	5e-86	84.46	579 bp (57.3%)	1
Description:	Symbols: BBC1, RSU2 \| ATBBC1 (breast basic conserved 1); structural constituent of ribosome \| &hellip
swissprot	blastx	P41127	314	4e-85	84.46	579 bp (57.3%)	1
Description:	60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4012.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4012.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4012.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4012.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4012.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4012.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4012.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4012.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4012.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4012.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4012.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	2272.90	2272.90	30.87	0.01
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	2780.62	2776.05	305.72	0.11
	Gene expression data from Aft red fruit flesh	endocarp	3	3	3765.81	3691.94	214.91	0.06
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	2392.15	2377.36	34.74	0.01
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	3511.91	3850.01	685.24	0.20
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	2645.72	2645.72	189.81	0.07
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	3100.98	2943.28	462.22	0.15
	Gene expression data from Aft red fruit peel	exocarp	3	3	3727.76	3763.31	84.02	0.02
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	2653.44	2623.65	287.61	0.11
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	2946.71	2930.74	68.48	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	4032.34	3955.65	640.18	0.16
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	2767.88	2767.88	190.30	0.07
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	3232.95	3213.65	301.65	0.09
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	2692.60	2692.60	582.90	0.22
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	3972.22	3916.90	285.74	0.07
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	2785.18	2785.18	64.31	0.02
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1630.34	1630.34	30.50	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	2366.85	2421.17	126.82	0.05
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	2902.93	3141.02	633.49	0.22
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	2567.06	2577.95	41.19	0.02
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	2725.04	2725.04	98.29	0.04
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	3125.01	3182.92	188.49	0.06
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	3986.90	4129.80	550.79	0.14
	Gene expression data from Micro-Tom root	root	3	3	5188.95	5121.33	294.46	0.06

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	2294.73	2e-4	P
	GSM480171 extract 1	2251.08	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	2477.21	2e-4	P
	GSM480201 extract 1	2776.05	2e-4	P
	GSM480202 extract 1	3088.59	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	3597.57	2e-4	P
	GSM480204 extract 1	4007.91	2e-4	P
	GSM480205 extract 1	3691.94	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	2377.36	2e-4	P
	GSM480214 extract 1	2431.84	2e-4	P
	GSM480213 extract 1	2367.25	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	3850.01	2e-4	P
	GSM480180 extract 1	2723.33	2e-4	P
	GSM480181 extract 1	3962.39	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	2511.5	2e-4	P
	GSM480184 extract 1	2779.93	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	3621.41	2e-4	P
	GSM480208 extract 1	2738.24	2e-4	P
	GSM480206 extract 1	2943.28	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	3763.31	2e-4	P
	GSM480210 extract 1	3631.81	2e-4	P
	GSM480211 extract 1	3788.17	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	2954.78	2e-4	P
	GSM480218 extract 1	2623.65	2e-4	P
	GSM480219 extract 1	2381.88	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	3021.76	2e-4	P
	GSM480222 extract 1	2930.74	2e-4	P
	GSM480223 extract 1	2887.63	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	3955.65	2e-4	P
	GSM480192 extract 1	4707.41	2e-4	P
	GSM480190 extract 1	3433.95	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	2633.32	2e-4	P
	GSM480196 extract 1	2902.44	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	2941.41	2e-4	P
	GSM480197 extract 1	3213.65	2e-4	P
	GSM480198 extract 1	3543.79	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	2280.42	2e-4	P
	GSM480194 extract 1	3104.77	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	3789.51	2e-4	P
	GSM480230 extract 1	3711.12	2e-4	P
	GSM480228 extract 1	4343.96	2e-4	P
	GSM480229 extract 1	4044.28	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	2739.71	2e-4	P
	GSM480169 extract 1	2830.66	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1608.78	2e-4	P
	GSM480173 extract 1	1651.91	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	2221.91	2e-4	P
	GSM480175 extract 1	2421.17	2e-4	P
	GSM480176 extract 1	2457.46	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	3382.87	2e-4	P
	GSM480179 extract 1	3141.02	2e-4	P
	GSM480177 extract 1	2184.89	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	2577.95	2e-4	P
	GSM480217 extract 1	2601.72	2e-4	P
	GSM480215 extract 1	2521.52	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	2655.54	2e-4	P
	GSM480186 extract 1	2794.55	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	3182.92	2e-4	P
	GSM480188 extract 1	2914.35	2e-4	P
	GSM480189 extract 1	3277.75	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	4475.79	2e-4	P
	GSM480225 extract 1	4007.06	2e-4	P
	GSM480226 extract 1	4252.54	2e-4	P
	GSM480227 extract 1	3212.22	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	5121.33	2e-4	P
	GSM480167 extract 1	4934.18	2e-4	P
	GSM480165 extract 1	5511.34	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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