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Expression Template: Les.3678.1.S1_at

Template Basic Information

Template name:	Les.3678.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577857
External db links:	GenBank: BG125166

Annotations for unigene SGN-U577857 (manual: 1 | blast: 3 | go: 1 )

Manual annotations

Based on clone cLES-20-D19, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: 14-3-3 protein Annotation Keywords: signal transduction; kinase signaling; 14-3-3 domain

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|26454610\|sp\|P93213\|14338_SOLLC	496	1e-138	100	783 bp (69.4%)	2
Description:	RecName:
arabidopsis	blastx	At2G42590.2	373	1e-103	72.9	783 bp (69.4%)	2
Description:	Symbols: GF14 MU, GENERAL REGULATORY FACTOR 9, GRF9 \| GRF9 (General regulatory factor 9); prot&hellip
swissprot	blastx	P93213	496	9e-140	100	783 bp (69.4%)	2
Description:	14-3-3 protein 8 OS=Solanum lycopersicum GN=TFT8 PE=2 SV=2

GO Terms Annotations

GO:0019904protein domain specific binding

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3678.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.3678.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.3678.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.3678.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.3678.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.3678.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.3678.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.3678.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.3678.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.3678.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.3678.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	912.98	912.98	74.84	0.08
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	769.87	815.65	102.63	0.13
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	1435.30	1435.30	220.99	0.15
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	1081.03	1099.51	80.82	0.07
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	503.97	500.69	49.23	0.10
	Gene expression data from Aft red fruit peel	exocarp	3	3	1002.41	982.84	60.39	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	424.17	427.39	21.49	0.05
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	530.12	528.85	3.67	0.01
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1162.38	1045.69	290.10	0.25
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1016.21	1016.21	38.75	0.04
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	741.98	789.57	87.05	0.12
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1329.50	1329.50	46.59	0.04
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1071.49	1159.01	207.70	0.19
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1169.08	1169.08	105.58	0.09
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	817.65	817.65	3.96	0.00
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	899.21	863.91	170.89	0.19
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1197.93	1196.81	3.12	0.00
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1333.50	1312.71	48.69	0.04
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	551.86	546.84	35.05	0.06
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	844.94	847.74	8.56	0.01
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	1069.05	981.46	331.25	0.31
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	1329.22	1329.22	289.77	0.22
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	1989.98	2263.60	625.72	0.31
	Gene expression data from Micro-Tom root	root	3	3	1496.84	1484.37	109.13	0.07

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	965.903	2e-4	P
	GSM480170 extract 1	860.058	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	841.632	2e-4	P
	GSM480201 extract 1	815.652	2e-4	P
	GSM480202 extract 1	652.313	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1279.04	2e-4	P
	GSM480186 extract 1	1591.57	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	1151.01	2e-4	P
	GSM480188 extract 1	1099.51	2e-4	P
	GSM480189 extract 1	992.579	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	554.76	2e-4	P
	GSM480206 extract 1	500.694	2e-4	P
	GSM480207 extract 1	456.465	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	982.844	2e-4	P
	GSM480209 extract 1	954.227	2e-4	P
	GSM480210 extract 1	1070.15	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	401.251	2e-4	P
	GSM480218 extract 1	427.387	2e-4	P
	GSM480220 extract 1	443.859	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	527.251	2e-4	P
	GSM480222 extract 1	534.258	2e-4	P
	GSM480221 extract 1	528.846	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	1492.66	2e-4	P
	GSM480192 extract 1	1045.69	2e-4	P
	GSM480190 extract 1	948.796	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	1043.61	2e-4	P
	GSM480195 extract 1	988.806	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	641.509	2e-4	P
	GSM480198 extract 1	789.569	2e-4	P
	GSM480199 extract 1	794.862	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1362.45	2e-4	P
	GSM480194 extract 1	1296.56	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	1125.74	2e-4	P
	GSM480230 extract 1	1203.71	2e-4	P
	GSM480231 extract 1	764.237	2e-4	P
	GSM480229 extract 1	1192.28	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1243.74	2e-4	P
	GSM480169 extract 1	1094.43	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	814.844	2e-4	P
	GSM480173 extract 1	820.45	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	748.733	2e-4	P
	GSM480176 extract 1	1085	2e-4	P
	GSM480174 extract 1	863.909	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	1195.52	2e-4	P
	GSM480177 extract 1	1196.81	2e-4	P
	GSM480178 extract 1	1201.45	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	1298.65	2e-4	P
	GSM480205 extract 1	1389.13	2e-4	P
	GSM480203 extract 1	1312.71	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	519.587	2e-4	P
	GSM480212 extract 1	546.841	2e-4	P
	GSM480213 extract 1	589.146	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	851.75	2e-4	P
	GSM480216 extract 1	847.744	2e-4	P
	GSM480217 extract 1	835.327	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	790.39	2e-4	P
	GSM480181 extract 1	1435.29	2e-4	P
	GSM480182 extract 1	981.464	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1124.32	2e-4	P
	GSM480184 extract 1	1534.12	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	2160.43	2e-4	P
	GSM480227 extract 1	1062.98	2e-4	P
	GSM480226 extract 1	2369.74	2e-4	P
	GSM480225 extract 1	2366.76	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	1611.67	2e-4	P
	GSM480167 extract 1	1484.37	2e-4	P
	GSM480165 extract 1	1394.48	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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