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Expression Template: Les.4678.1.S1_at

Template Basic Information

Template name:	Les.4678.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U564020
External db links:	GenBank: BT013153.1

Annotations for unigene SGN-U564020 (manual: 1 | blast: 3 | go: 7 )

Manual annotations

Based on clone cLEC-37-O11, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: tubulin beta-8 chain Annotation Keywords: cell structure; cytoskeleton; tubulin; microtubule; microtubules

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|115450157\|ref\|NP_001048679.1\|	845	98.6	1290 bp (80.6%)	2
Description:	Os03g0105600 [Oryza sativa (japonica cultivar-group)] >gi74053561\|sp\|Q8H7U1.1\|TBB2_ORYSJ RecNam&hellip
arabidopsis	blastx	At5G23860.1	843	98.14	1290 bp (80.6%)	2
Description:	Symbols: TUB8 \| TUB8 (tubulin beta-8) \| chr5:8042965-8044531 FORWARD
swissprot	blastx	Q8H7U1	845	98.6	1290 bp (80.6%)	2
Description:	Tubulin beta-2 chain OS=Oryza sativa subsp. japonica GN=TUBB2 PE=2 SV=1

GO Terms Annotations

GO:0005198structural molecule activity
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0043234protein complex
GO:0007018microtubule-based movement
GO:0005874microtubule
GO:0051258protein polymerization

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4678.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4678.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4678.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4678.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4678.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4678.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4678.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4678.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4678.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4678.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4678.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	302.87	302.87	42.05	0.14
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	28.26	27.69	7.00	0.25
	Gene expression data from Aft red fruit flesh	endocarp	3	3	20.38	17.08	6.12	0.30
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	302.12	276.28	79.70	0.26
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	207.35	207.35	152.93	0.74
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	79.01	73.88	18.24	0.23
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	67.67	67.82	9.51	0.14
	Gene expression data from Aft red fruit peel	exocarp	3	3	28.20	28.96	1.60	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	117.30	118.28	6.40	0.05
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	30.95	29.73	7.37	0.24
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	249.05	221.89	74.49	0.30
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	129.52	129.52	118.36	0.91
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	88.69	83.38	16.31	0.18
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	121.07	121.07	4.21	0.03
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	88.07	87.85	12.19	0.14
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	486.13	486.13	52.59	0.11
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	563.94	563.94	52.74	0.09
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	499.20	461.35	81.56	0.16
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	775.21	804.71	95.25	0.12
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	99.22	103.43	20.70	0.21
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	29.66	30.47	1.66	0.06
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	138.88	138.37	35.72	0.26
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	186.94	186.94	0.03	0.00
	Gene expression data from Micro-Tom root	root	3	3	669.16	689.00	50.75	0.08

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	273.138	0.001	P
	GSM480171 extract 1	332.608	7e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	21.5551	0.038	P
	GSM480201 extract 1	35.5241	0.014	P
	GSM480202 extract 1	27.6931	0.014	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	17.0789	0.095	A
	GSM480205 extract 1	16.6245	0.030	P
	GSM480203 extract 1	27.4507	0.030	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	276.277	0.001	P
	GSM480180 extract 1	391.531	0.003	P
	GSM480182 extract 1	238.54	0.004	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	315.482	0.001	P
	GSM480186 extract 1	99.211	0.004	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	105.184	0.014	P
	GSM480226 extract 1	71.9444	0.014	P
	GSM480227 extract 1	63.1102	0.011	P
	GSM480224 extract 1	75.8074	0.014	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	77.1104	0.008	P
	GSM480206 extract 1	58.0862	0.011	P
	GSM480207 extract 1	67.8249	0.024	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	28.9649	0.030	P
	GSM480210 extract 1	26.3604	0.024	P
	GSM480211 extract 1	29.2811	0.014	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	123.153	0.001	P
	GSM480219 extract 1	110.463	0.001	P
	GSM480220 extract 1	118.28	0.002	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	29.7335	0.068	A
	GSM480222 extract 1	24.2628	0.019	P
	GSM480223 extract 1	38.8444	0.024	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	191.938	0.011	P
	GSM480190 extract 1	333.307	0.011	P
	GSM480191 extract 1	221.892	0.006	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	45.8273	0.011	P
	GSM480195 extract 1	213.214	0.002	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	83.3821	0.019	P
	GSM480198 extract 1	106.997	0.030	P
	GSM480199 extract 1	75.6999	0.024	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	124.044	0.011	P
	GSM480194 extract 1	118.091	0.004	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	99.2723	0.011	P
	GSM480230 extract 1	97.9538	0.008	P
	GSM480231 extract 1	77.3178	0.006	P
	GSM480228 extract 1	77.737	0.008	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	523.318	7e-4	P
	GSM480169 extract 1	448.951	7e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	526.648	7e-4	P
	GSM480173 extract 1	601.228	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	461.352	7e-4	P
	GSM480176 extract 1	592.81	7e-4	P
	GSM480175 extract 1	443.437	7e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	852.221	7e-4	P
	GSM480179 extract 1	804.708	7e-4	P
	GSM480177 extract 1	668.707	7e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	103.429	0.004	P
	GSM480213 extract 1	76.7341	0.006	P
	GSM480214 extract 1	117.492	7e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	27.7534	0.024	P
	GSM480215 extract 1	30.4708	0.030	P
	GSM480216 extract 1	30.7654	0.038	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	174.854	0.014	P
	GSM480189 extract 1	103.426	0.019	P
	GSM480187 extract 1	138.373	0.024	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	186.921	0.006	P
	GSM480184 extract 1	186.957	7e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	707	7e-4	P
	GSM480166 extract 1	611.485	0.001	P
	GSM480167 extract 1	688.997	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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