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Expression Template: Les.4645.1.S1_at

Template Basic Information

Template name:	Les.4645.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U585501
External db links:	GenBank: BT014240.1

Annotations for unigene SGN-U585501 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLED-19-N17, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: SYNC1 Annotation Keywords: other

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|15241897\|ref\|NP_200479.1\|	786	68.02	1764 bp (80.3%)	2
Description:	SYNC1; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucl&hellip
arabidopsis	blastx	At5G56680.1	786	68.02	1764 bp (80.3%)	2
Description:	Symbols: EMB2755 \| EMB2755 (EMBRYO DEFECTIVE 2755); ATP binding / aminoacyl-tRNA ligase/ aspar&hellip
swissprot	blastx	Q9SW96	786	68.02	1764 bp (80.3%)	2
Description:	Asparaginyl-tRNA synthetase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4645.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4645.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4645.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4645.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4645.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4645.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4645.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4645.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4645.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4645.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4645.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1144.65	1144.65	43.02	0.04
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	2719.28	2869.79	270.22	0.10
	Gene expression data from Aft red fruit flesh	endocarp	3	3	2610.78	2693.08	186.32	0.07
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	2038.20	1932.23	240.58	0.12
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	1979.40	1927.28	246.52	0.12
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	2532.19	2511.22	111.45	0.04
	Gene expression data from Aft red fruit peel	exocarp	3	3	2197.72	2061.92	263.61	0.12
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	2086.12	2158.34	305.82	0.15
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	3745.19	3704.54	215.58	0.06
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	2398.08	2238.86	446.03	0.19
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	2391.94	2391.94	101.48	0.04
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	3741.72	3805.83	366.68	0.10
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1508.43	1508.43	79.11	0.05
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1941.28	1833.16	290.22	0.15
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1699.80	1699.80	48.57	0.03
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1003.16	1003.16	43.64	0.04
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1393.49	1335.14	159.83	0.11
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1620.58	1600.09	112.58	0.07
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	3674.12	3681.02	171.33	0.05
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	2329.41	2555.94	542.37	0.23
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	2644.66	2644.66	177.67	0.07
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	3845.13	3638.29	403.64	0.10
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	2019.54	2019.54	45.06	0.02
	Gene expression data from Micro-Tom root	root	3	3	2433.12	2405.18	133.42	0.05

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	1175.07	2e-4	P
	GSM480170 extract 1	1114.23	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	2407.32	2e-4	P
	GSM480200 extract 1	2869.79	2e-4	P
	GSM480201 extract 1	2880.73	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	2741.78	2e-4	P
	GSM480205 extract 1	2693.08	2e-4	P
	GSM480203 extract 1	2397.48	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	1932.23	2e-4	P
	GSM480212 extract 1	2313.57	2e-4	P
	GSM480214 extract 1	1868.79	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	1979.38	2e-4	P
	GSM480227 extract 1	2319.64	2e-4	P
	GSM480224 extract 1	1875.18	2e-4	P
	GSM480225 extract 1	1743.4	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	2432.71	2e-4	P
	GSM480207 extract 1	2652.63	2e-4	P
	GSM480208 extract 1	2511.22	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	2061.92	2e-4	P
	GSM480209 extract 1	2501.54	2e-4	P
	GSM480210 extract 1	2029.69	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	2349.36	2e-4	P
	GSM480218 extract 1	2158.34	2e-4	P
	GSM480219 extract 1	1750.65	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	3978.2	2e-4	P
	GSM480222 extract 1	3704.54	2e-4	P
	GSM480223 extract 1	3552.83	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	2053.51	2e-4	P
	GSM480191 extract 1	2901.87	2e-4	P
	GSM480192 extract 1	2238.86	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	2463.69	2e-4	P
	GSM480195 extract 1	2320.18	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	3805.83	2e-4	P
	GSM480197 extract 1	4072.11	2e-4	P
	GSM480199 extract 1	3347.21	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	1564.37	2e-4	P
	GSM480193 extract 1	1452.49	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	1728.63	2e-4	P
	GSM480228 extract 1	1842.05	2e-4	P
	GSM480229 extract 1	1824.27	2e-4	P
	GSM480231 extract 1	2370.15	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1665.46	2e-4	P
	GSM480169 extract 1	1734.15	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1034.02	2e-4	P
	GSM480173 extract 1	972.3	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	1574.3	2e-4	P
	GSM480174 extract 1	1335.14	2e-4	P
	GSM480175 extract 1	1271.03	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	1600.09	2e-4	P
	GSM480179 extract 1	1519.66	2e-4	P
	GSM480178 extract 1	1742	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	3681.02	2e-4	P
	GSM480217 extract 1	3499.44	2e-4	P
	GSM480216 extract 1	3841.9	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	2555.94	2e-4	P
	GSM480181 extract 1	2721.78	2e-4	P
	GSM480182 extract 1	1710.5	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	2519.03	2e-4	P
	GSM480185 extract 1	2770.3	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	3638.29	2e-4	P
	GSM480189 extract 1	3586.84	2e-4	P
	GSM480187 extract 1	4310.26	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	2051.41	2e-4	P
	GSM480184 extract 1	1987.68	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	2578.3	2e-4	P
	GSM480165 extract 1	2405.18	2e-4	P
	GSM480167 extract 1	2315.89	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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