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Expression Template: Les.4459.1.S1_s_at

Template Basic Information

Template name:	Les.4459.1.S1_s_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577484
External db links:	GenBank: X99148.1

Annotations for unigene SGN-U577484 (manual: 1 | blast: 0 | go: 0 )

Manual annotations

Based on clone cLET-1-H3, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: arabinogalactan protein Annotation Keywords: cell wall; cell wall protein

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits (or none blast was used over this dataset)
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4459.1.S1_s_at:ProbePair6	PM	data not available	data not available	data not available
Les.4459.1.S1_s_at:ProbePair7	PM	data not available	data not available	data not available
Les.4459.1.S1_s_at:ProbePair8	PM	data not available	data not available	data not available
Les.4459.1.S1_s_at:ProbePair9	PM	data not available	data not available	data not available
Les.4459.1.S1_s_at:ProbePair0	PM	data not available	data not available	data not available
Les.4459.1.S1_s_at:ProbePair1	PM	data not available	data not available	data not available
Les.4459.1.S1_s_at:ProbePair10	PM	data not available	data not available	data not available
Les.4459.1.S1_s_at:ProbePair2	PM	data not available	data not available	data not available
Les.4459.1.S1_s_at:ProbePair3	PM	data not available	data not available	data not available
Les.4459.1.S1_s_at:ProbePair4	PM	data not available	data not available	data not available
Les.4459.1.S1_s_at:ProbePair5	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1380.92	1380.92	261.16	0.19
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1454.51	1339.13	206.01	0.14
	Gene expression data from Aft red fruit flesh	endocarp	3	3	616.57	592.42	44.28	0.07
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	514.94	587.78	130.59	0.25
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	739.37	841.53	354.71	0.48
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	4230.68	4230.68	2452.38	0.58
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	1515.02	1294.24	647.19	0.43
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1215.14	1217.86	49.26	0.04
	Gene expression data from Aft red fruit peel	exocarp	3	3	83.67	77.99	10.30	0.12
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	494.34	463.07	99.30	0.20
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	249.47	229.42	56.84	0.23
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1688.14	1536.28	609.15	0.36
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	945.36	945.36	882.15	0.93
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2562.70	2912.51	631.31	0.25
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1367.17	1367.17	1142.65	0.84
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	900.56	882.71	234.85	0.26
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	3423.20	3423.20	374.36	0.11
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	2492.70	2492.70	63.46	0.03
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	399.34	344.45	124.58	0.31
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	636.21	640.18	213.06	0.33
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	3744.07	3645.79	886.32	0.24
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	3540.12	3540.12	2369.03	0.67
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	5139.01	5247.89	517.62	0.10
	Gene expression data from Micro-Tom root	root	3	3	3468.87	3497.26	298.67	0.09

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	1196.26	2e-4	P
	GSM480171 extract 1	1565.59	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	1339.13	2e-4	P
	GSM480202 extract 1	1332.05	2e-4	P
	GSM480200 extract 1	1692.36	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	667.683	2e-4	P
	GSM480205 extract 1	592.423	2e-4	P
	GSM480204 extract 1	589.616	7e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	592.875	2e-4	P
	GSM480212 extract 1	587.778	2e-4	P
	GSM480213 extract 1	364.175	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	344.791	2e-4	P
	GSM480216 extract 1	1031.78	2e-4	P
	GSM480217 extract 1	841.534	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	5964.77	2e-4	P
	GSM480184 extract 1	2496.58	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	1271.57	2e-4	P
	GSM480226 extract 1	1007.58	2e-4	P
	GSM480227 extract 1	2464	2e-4	P
	GSM480225 extract 1	1316.91	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	1262.98	2e-4	P
	GSM480206 extract 1	1217.86	2e-4	P
	GSM480208 extract 1	1164.57	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	77.4576	0.030	P
	GSM480210 extract 1	77.9891	0.024	P
	GSM480209 extract 1	95.5526	0.011	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	463.072	2e-4	P
	GSM480220 extract 1	414.446	2e-4	P
	GSM480218 extract 1	605.513	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	229.421	7e-4	P
	GSM480222 extract 1	313.61	7e-4	P
	GSM480221 extract 1	205.37	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	2358.85	2e-4	P
	GSM480191 extract 1	1536.28	2e-4	P
	GSM480192 extract 1	1169.29	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	1569.13	2e-4	P
	GSM480196 extract 1	321.584	7e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	2912.51	2e-4	P
	GSM480197 extract 1	1833.92	2e-4	P
	GSM480198 extract 1	2941.68	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	559.193	7e-4	P
	GSM480193 extract 1	2175.14	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	639.984	2e-4	P
	GSM480230 extract 1	950.376	7e-4	P
	GSM480231 extract 1	1196.83	2e-4	P
	GSM480229 extract 1	815.05	7e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	3687.91	2e-4	P
	GSM480168 extract 1	3158.48	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	2537.58	2e-4	P
	GSM480173 extract 1	2447.83	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	311.634	2e-4	P
	GSM480176 extract 1	541.932	2e-4	P
	GSM480175 extract 1	344.446	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	847.255	2e-4	P
	GSM480177 extract 1	421.193	2e-4	P
	GSM480179 extract 1	640.181	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	2910.99	2e-4	P
	GSM480181 extract 1	3645.79	2e-4	P
	GSM480180 extract 1	4675.44	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	1864.96	2e-4	P
	GSM480185 extract 1	5215.28	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	5247.89	2e-4	P
	GSM480187 extract 1	5593.53	2e-4	P
	GSM480188 extract 1	4575.62	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	3497.26	2e-4	P
	GSM480166 extract 1	3752.34	2e-4	P
	GSM480167 extract 1	3157.02	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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