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Expression Template: Les.5108.1.S1_at

Template Basic Information

Template name:	Les.5108.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U574965
External db links:	GenBank: BT013292.1

Annotations for unigene SGN-U574965 (manual: 1 | blast: 2 | go: 4 )

Manual annotations

Based on clone cLED-5-K16, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "kinase, receptor kinase" Annotation Keywords: signal transduction; kinase; phosphorylation; receptor kinase; receptor; signal perception

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|116779054\|gb\|ABK21119.1\|	351	6e-95	74.65	648 bp (58.4%)	3
Description:	unknown [Picea sitchensis]
arabidopsis	blastx	At4G22140.2	330	1e-90	69.91	645 bp (58.1%)	3
Description:	DNA binding \| chr4:11728105-11730242 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

GO:0006355regulation of transcription, DNA-dependent
GO:0008270zinc ion binding
GO:0005515protein binding
GO:0003677DNA binding

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.5108.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.5108.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.5108.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.5108.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.5108.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.5108.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.5108.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.5108.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.5108.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.5108.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.5108.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	371.93	371.93	77.93	0.21
	Gene expression data from Aft red fruit flesh	endocarp	3	3	678.59	663.37	65.33	0.10
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	956.77	962.97	18.34	0.02
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	659.77	664.18	121.26	0.18
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	666.32	666.32	32.50	0.05
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	521.45	521.45	128.64	0.25
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	388.64	311.73	178.24	0.46
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1077.93	1063.46	66.08	0.06
	Gene expression data from Aft red fruit peel	exocarp	3	3	985.86	1003.87	38.66	0.04
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	996.51	999.85	39.25	0.04
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1385.11	1360.11	50.62	0.04
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	523.10	592.41	160.94	0.31
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	719.51	719.51	87.11	0.12
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	840.42	862.08	43.35	0.05
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	426.76	426.76	114.03	0.27
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	327.97	242.75	173.62	0.53
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	608.48	608.48	161.30	0.27
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	512.61	512.61	45.60	0.09
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	520.72	522.97	30.11	0.06
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	415.96	415.97	1.74	0.00
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1014.05	1024.58	29.68	0.03
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	1255.31	1243.91	27.77	0.02
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	675.32	697.01	42.53	0.06
	Gene expression data from Micro-Tom root	root	3	3	445.24	426.12	37.15	0.08

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	316.822	2e-4	P
	GSM480171 extract 1	427.032	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	622.215	2e-4	P
	GSM480204 extract 1	663.369	2e-4	P
	GSM480205 extract 1	750.179	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	936.133	2e-4	P
	GSM480212 extract 1	971.211	2e-4	P
	GSM480213 extract 1	962.974	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	778.775	2e-4	P
	GSM480180 extract 1	536.371	2e-4	P
	GSM480182 extract 1	664.177	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	643.341	2e-4	P
	GSM480186 extract 1	689.299	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	612.417	2e-4	P
	GSM480183 extract 1	430.488	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	653.531	2e-4	P
	GSM480224 extract 1	333.8	2e-4	P
	GSM480225 extract 1	277.577	2e-4	P
	GSM480226 extract 1	289.657	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	1063.46	2e-4	P
	GSM480207 extract 1	1150.05	2e-4	P
	GSM480208 extract 1	1020.28	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	941.482	2e-4	P
	GSM480211 extract 1	1012.22	2e-4	P
	GSM480209 extract 1	1003.87	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	999.847	2e-4	P
	GSM480219 extract 1	955.696	2e-4	P
	GSM480220 extract 1	1033.98	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	1351.85	2e-4	P
	GSM480223 extract 1	1443.36	2e-4	P
	GSM480221 extract 1	1360.11	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	339.12	2e-4	P
	GSM480191 extract 1	637.77	2e-4	P
	GSM480192 extract 1	592.407	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	657.918	2e-4	P
	GSM480196 extract 1	781.111	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	790.515	2e-4	P
	GSM480198 extract 1	868.673	2e-4	P
	GSM480199 extract 1	862.076	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	346.13	2e-4	P
	GSM480194 extract 1	507.393	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	588.362	2e-4	P
	GSM480228 extract 1	244.751	2e-4	P
	GSM480229 extract 1	240.758	2e-4	P
	GSM480230 extract 1	238.018	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	494.426	2e-4	P
	GSM480169 extract 1	722.535	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	480.371	2e-4	P
	GSM480173 extract 1	544.857	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	549.64	2e-4	P
	GSM480176 extract 1	489.538	2e-4	P
	GSM480175 extract 1	522.968	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	415.967	2e-4	P
	GSM480179 extract 1	414.22	2e-4	P
	GSM480178 extract 1	417.704	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	1024.58	2e-4	P
	GSM480200 extract 1	980.543	2e-4	P
	GSM480201 extract 1	1037.02	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	1286.97	2e-4	P
	GSM480216 extract 1	1235.05	2e-4	P
	GSM480217 extract 1	1243.91	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	697.011	2e-4	P
	GSM480187 extract 1	626.311	2e-4	P
	GSM480188 extract 1	702.633	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	421.54	2e-4	P
	GSM480166 extract 1	426.119	2e-4	P
	GSM480167 extract 1	488.058	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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