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Expression Template: Les.3565.1.S1_a_at

Template Basic Information

Template name:	Les.3565.1.S1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U568534
External db links:	GenBank: AJ002284.1

Annotations for unigene SGN-U568534 (manual: 0 | blast: 3 | go: 9 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|59798480\|sp\|Q9ZS62\|PHYB1_LYCES	1074	100	1629 bp (84.1%)	2
Description:	Phytochrome
arabidopsis	blastx	At2G18790.1	776	69.76	1623 bp (83.8%)	2
Description:	Symbols: HY3, OOP1, PHYB \| PHYB (PHYTOCHROME B); G-protein coupled photoreceptor/ signal trans&hellip
swissprot	blastx	Q9ZS62	1074	100	1629 bp (84.1%)	2
Description:	Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE=2 SV=1

GO Terms Annotations

GO:0000155two-component sensor molecule activity
GO:0008020G-protein coupled photoreceptor activity
GO:0016301kinase activity
GO:0005524ATP binding
GO:0006355regulation of transcription, DNA-dependent
GO:0016020membrane
GO:0007165signal transduction
GO:0006468protein amino acid phosphorylation
GO:0004871signal transducer activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3565.1.S1_a_at:ProbePair0	PM	data not available	data not available	data not available
Les.3565.1.S1_a_at:ProbePair1	PM	data not available	data not available	data not available
Les.3565.1.S1_a_at:ProbePair10	PM	data not available	data not available	data not available
Les.3565.1.S1_a_at:ProbePair2	PM	data not available	data not available	data not available
Les.3565.1.S1_a_at:ProbePair3	PM	data not available	data not available	data not available
Les.3565.1.S1_a_at:ProbePair4	PM	data not available	data not available	data not available
Les.3565.1.S1_a_at:ProbePair5	PM	data not available	data not available	data not available
Les.3565.1.S1_a_at:ProbePair6	PM	data not available	data not available	data not available
Les.3565.1.S1_a_at:ProbePair7	PM	data not available	data not available	data not available
Les.3565.1.S1_a_at:ProbePair8	PM	data not available	data not available	data not available
Les.3565.1.S1_a_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	352.03	352.03	121.21	0.34
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	168.40	170.82	11.03	0.07
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	223.02	225.29	27.45	0.12
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	176.97	155.43	44.67	0.25
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	164.51	164.51	72.61	0.44
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	107.81	118.59	35.17	0.33
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	150.20	146.82	10.02	0.07
	Gene expression data from Aft red fruit peel	exocarp	3	3	197.66	202.02	20.69	0.10
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	166.44	166.17	2.25	0.01
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	189.52	190.22	4.35	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	161.35	151.10	81.52	0.51
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	212.94	212.94	4.79	0.02
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	195.64	200.64	9.56	0.05
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	182.07	182.07	44.26	0.24
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	136.72	137.28	2.82	0.02
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	412.48	412.48	88.12	0.21
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	322.70	322.70	16.62	0.05
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	550.80	502.12	112.19	0.20
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	491.92	520.01	66.58	0.14
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	167.49	163.13	12.33	0.07
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	195.34	194.99	15.28	0.08
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	127.68	128.33	13.04	0.10
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	112.02	112.02	15.93	0.14
	Gene expression data from Micro-Tom root	root	3	3	172.73	177.87	16.18	0.09

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	266.326	2e-4	P
	GSM480171 extract 1	437.737	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	156.361	0.001	P
	GSM480200 extract 1	170.816	7e-4	P
	GSM480201 extract 1	178.012	0.001	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	249.261	7e-4	P
	GSM480217 extract 1	194.507	2e-4	P
	GSM480216 extract 1	225.292	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	228.328	7e-4	P
	GSM480182 extract 1	147.153	7e-4	P
	GSM480180 extract 1	155.431	7e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	215.855	7e-4	P
	GSM480186 extract 1	113.163	0.002	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	137.252	7e-4	P
	GSM480225 extract 1	56.8111	0.011	P
	GSM480226 extract 1	121.011	0.002	P
	GSM480224 extract 1	116.161	7e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	146.819	2e-4	P
	GSM480207 extract 1	142.316	2e-4	P
	GSM480208 extract 1	161.475	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	202.018	2e-4	P
	GSM480209 extract 1	215.814	2e-4	P
	GSM480211 extract 1	175.139	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	166.174	2e-4	P
	GSM480219 extract 1	164.333	2e-4	P
	GSM480220 extract 1	168.815	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	184.862	7e-4	P
	GSM480221 extract 1	190.218	2e-4	P
	GSM480222 extract 1	193.479	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	85.436	0.001	P
	GSM480192 extract 1	151.096	2e-4	P
	GSM480191 extract 1	247.51	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	209.549	7e-4	P
	GSM480195 extract 1	216.329	7e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	200.639	7e-4	P
	GSM480197 extract 1	184.611	7e-4	P
	GSM480199 extract 1	201.666	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	150.773	0.001	P
	GSM480194 extract 1	213.365	7e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	137.315	7e-4	P
	GSM480230 extract 1	132.803	7e-4	P
	GSM480228 extract 1	137.237	7e-4	P
	GSM480231 extract 1	139.534	7e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	350.17	2e-4	P
	GSM480169 extract 1	474.796	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	334.448	2e-4	P
	GSM480172 extract 1	310.943	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	471.159	2e-4	P
	GSM480175 extract 1	502.12	2e-4	P
	GSM480176 extract 1	679.107	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	520.012	2e-4	P
	GSM480178 extract 1	415.905	2e-4	P
	GSM480179 extract 1	539.848	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	181.412	7e-4	P
	GSM480203 extract 1	157.929	7e-4	P
	GSM480204 extract 1	163.131	0.001	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	194.991	7e-4	P
	GSM480213 extract 1	180.234	2e-4	P
	GSM480212 extract 1	210.788	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	128.329	7e-4	P
	GSM480188 extract 1	114.317	0.001	P
	GSM480187 extract 1	140.38	7e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	100.758	0.003	P
	GSM480184 extract 1	123.289	7e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	185.72	7e-4	P
	GSM480166 extract 1	177.867	7e-4	P
	GSM480167 extract 1	154.615	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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