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Expression Template: Les.5608.1.S1_a_at

Template Basic Information

Template name:	Les.5608.1.S1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U570818
External db links:	GenBank: BT014248.1

Annotations for unigene SGN-U570818 (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|18404505\|ref\|NP_566764.1\|	479	3e-133	76.52	1086 bp (60.6%)	1
Description:	bile acid:sodium symporter family protein [Arabidopsis thaliana] >gi19698909\|gb\|AAL91190.1\| unk&hellip
arabidopsis	blastx	At3G25410.1	479	2e-135	76.52	1086 bp (60.6%)	1
Description:	bile acid:sodium symporter family protein \| chr3:9215802-9217568 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

GO:0006814sodium ion transport
GO:0008508bile acid:sodium symporter activity
GO:0016020membrane

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.5608.1.S1_a_at:ProbePair0	PM	data not available	data not available	data not available
Les.5608.1.S1_a_at:ProbePair1	PM	data not available	data not available	data not available
Les.5608.1.S1_a_at:ProbePair10	PM	data not available	data not available	data not available
Les.5608.1.S1_a_at:ProbePair2	PM	data not available	data not available	data not available
Les.5608.1.S1_a_at:ProbePair3	PM	data not available	data not available	data not available
Les.5608.1.S1_a_at:ProbePair4	PM	data not available	data not available	data not available
Les.5608.1.S1_a_at:ProbePair5	PM	data not available	data not available	data not available
Les.5608.1.S1_a_at:ProbePair6	PM	data not available	data not available	data not available
Les.5608.1.S1_a_at:ProbePair7	PM	data not available	data not available	data not available
Les.5608.1.S1_a_at:ProbePair8	PM	data not available	data not available	data not available
Les.5608.1.S1_a_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	394.57	394.57	148.40	0.38
	Gene expression data from Aft red fruit flesh	endocarp	3	3	1036.46	1009.30	52.24	0.05
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	1626.65	1628.23	133.56	0.08
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	384.36	382.21	71.87	0.19
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	562.36	562.36	178.47	0.32
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1582.13	1465.71	215.81	0.14
	Gene expression data from Aft red fruit peel	exocarp	3	3	1186.29	1245.78	119.16	0.10
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1751.98	1737.39	115.40	0.07
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1940.42	1823.34	219.39	0.11
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	537.47	535.20	27.65	0.05
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1395.68	1395.68	241.71	0.17
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	807.28	595.69	428.95	0.53
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	967.47	967.47	329.13	0.34
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	831.12	730.91	294.68	0.35
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	353.99	353.99	105.41	0.30
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1187.89	1187.89	316.44	0.27
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	585.70	732.74	278.76	0.48
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	214.43	115.06	259.24	1.21
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1111.24	1123.05	69.49	0.06
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	962.86	954.69	28.51	0.03
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	690.55	690.55	14.14	0.02
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	384.27	386.61	45.64	0.12
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	461.62	472.78	87.04	0.19
	Gene expression data from Micro-Tom root	root	3	3	43.27	45.78	4.86	0.11

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	499.507	0.002	P
	GSM480171 extract 1	289.634	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	1009.3	0.002	P
	GSM480203 extract 1	1096.69	7e-4	P
	GSM480204 extract 1	1003.39	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	1492.31	7e-4	P
	GSM480213 extract 1	1628.23	7e-4	P
	GSM480214 extract 1	1759.42	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	457.274	0.004	P
	GSM480180 extract 1	382.209	0.002	P
	GSM480181 extract 1	313.585	0.002	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	436.164	7e-4	P
	GSM480184 extract 1	688.559	0.001	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	1449.52	0.001	P
	GSM480206 extract 1	1831.15	7e-4	P
	GSM480207 extract 1	1465.71	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	1245.78	2e-4	P
	GSM480209 extract 1	1049.09	7e-4	P
	GSM480211 extract 1	1263.99	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	1737.39	7e-4	P
	GSM480219 extract 1	1644.57	7e-4	P
	GSM480218 extract 1	1873.99	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	2193.52	0.001	P
	GSM480221 extract 1	1804.41	0.002	P
	GSM480222 extract 1	1823.34	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	535.195	0.006	P
	GSM480192 extract 1	511.033	0.004	P
	GSM480190 extract 1	566.185	0.004	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	1566.6	2e-4	P
	GSM480196 extract 1	1224.77	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	525.231	0.001	P
	GSM480198 extract 1	595.69	0.002	P
	GSM480197 extract 1	1300.91	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	734.737	2e-4	P
	GSM480193 extract 1	1200.2	7e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	702.972	0.003	P
	GSM480229 extract 1	758.856	0.004	P
	GSM480231 extract 1	600.584	0.001	P
	GSM480230 extract 1	1262.07	0.004	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	279.453	0.002	P
	GSM480168 extract 1	428.519	0.001	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1411.65	2e-4	P
	GSM480173 extract 1	964.132	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	732.741	0.004	P
	GSM480175 extract 1	760.161	7e-4	P
	GSM480176 extract 1	264.21	0.001	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	508.659	0.002	P
	GSM480177 extract 1	19.5742	0.008	P
	GSM480178 extract 1	115.062	0.003	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	1036.6	2e-4	P
	GSM480202 extract 1	1174.06	7e-4	P
	GSM480200 extract 1	1123.05	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	994.559	2e-4	P
	GSM480215 extract 1	954.689	0.002	P
	GSM480217 extract 1	939.33	0.002	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	680.554	0.002	P
	GSM480186 extract 1	700.545	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	386.606	0.002	P
	GSM480188 extract 1	428.69	0.003	P
	GSM480189 extract 1	337.507	0.002	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	436.783	0.001	P
	GSM480225 extract 1	508.772	0.006	P
	GSM480227 extract 1	549.554	2e-4	P
	GSM480226 extract 1	351.363	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	46.3751	0.002	P
	GSM480165 extract 1	37.67	0.008	P
	GSM480166 extract 1	45.7756	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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