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Expression Template: Les.4034.1.A1_at

Template Basic Information

Template name:	Les.4034.1.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U582547
External db links:	GenBank: AF204789.1

Annotations for unigene SGN-U582547 (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits (or none blast was used over this dataset)
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4034.1.A1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4034.1.A1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4034.1.A1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4034.1.A1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4034.1.A1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4034.1.A1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4034.1.A1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4034.1.A1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4034.1.A1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4034.1.A1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4034.1.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	5.58	5.58	0.42	0.08
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	2.36	0.65	3.27	1.39
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	6.16	8.33	5.00	0.81
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	52.99	54.78	7.10	0.13
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	6.80	5.52	5.00	0.74
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	55.86	55.86	6.77	0.12
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	4.23	3.58	1.15	0.27
	Gene expression data from Aft red fruit peel	exocarp	3	3	80.89	79.26	23.91	0.30
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	5.08	3.67	3.65	0.72
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	47.23	37.49	19.75	0.42
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	2.99	2.35	2.27	0.76
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	94.87	94.87	53.07	0.56
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	165.40	60.72	204.03	1.23
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	45.53	45.53	24.98	0.55
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	78.02	67.27	39.10	0.50
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1.29	1.29	1.24	0.96
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	3.35	3.35	4.29	1.28
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	3.89	3.93	3.26	0.84
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	5.47	5.66	1.52	0.28
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	35.78	32.61	8.04	0.22
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	50.51	36.25	35.46	0.70
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	19.30	19.30	11.08	0.57
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	86.45	84.34	15.34	0.18
	Gene expression data from Micro-Tom root	root	3	3	4.35	4.92	2.53	0.58

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	5.28045	0.017	P
	GSM480171 extract 1	5.88094	0.303	A
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	0.290598	0.962	A
	GSM480201 extract 1	0.652943	0.781	A
	GSM480200 extract 1	6.12215	0.056	M
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	8.33373	0.068	A
	GSM480214 extract 1	0.443967	0.666	A
	GSM480212 extract 1	9.6988	0.006	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	45.1689	0.003	P
	GSM480216 extract 1	59.0175	0.003	P
	GSM480217 extract 1	54.7837	0.003	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	5.51967	0.150	A
	GSM480182 extract 1	12.3132	0.030	P
	GSM480180 extract 1	2.56104	0.466	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	60.6493	0.003	P
	GSM480185 extract 1	51.0722	0.001	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	3.58087	0.112	A
	GSM480207 extract 1	5.55403	0.068	A
	GSM480208 extract 1	3.5415	0.424	A
Gene expression data from Aft red fruit peel	GSM480211 extract 1	79.2577	2e-4	P
	GSM480209 extract 1	57.8422	0.006	P
	GSM480210 extract 1	105.569	7e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	2.34131	0.634	A
	GSM480220 extract 1	9.21801	0.019	P
	GSM480219 extract 1	3.67348	0.019	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	34.2513	0.004	P
	GSM480221 extract 1	69.9622	7e-4	P
	GSM480223 extract 1	37.4853	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	5.51022	0.046	P
	GSM480192 extract 1	2.34993	0.432	A
	GSM480190 extract 1	1.09954	0.534	A
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	132.401	0.002	P
	GSM480196 extract 1	57.3431	0.004	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	400.528	0.003	P
	GSM480198 extract 1	60.7228	7e-4	P
	GSM480199 extract 1	34.9497	0.001	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	27.8693	7e-4	P
	GSM480193 extract 1	63.1992	0.002	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	133.339	0.002	P
	GSM480229 extract 1	76.0044	7e-4	P
	GSM480228 extract 1	58.5368	7e-4	P
	GSM480231 extract 1	44.2158	0.002	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	2.17194	0.534	A
	GSM480169 extract 1	0.416135	0.870	A
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	0.313909	0.870	A
	GSM480172 extract 1	6.38737	0.304	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	0.608766	0.829	A
	GSM480174 extract 1	7.12485	0.366	A
	GSM480176 extract 1	3.93453	0.107	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	3.8627	0.399	A
	GSM480177 extract 1	6.89552	0.150	A
	GSM480178 extract 1	5.65792	0.219	A
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	44.9211	0.003	P
	GSM480205 extract 1	29.8102	2e-4	P
	GSM480204 extract 1	32.6135	0.004	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	24.3991	0.024	P
	GSM480188 extract 1	90.879	0.003	P
	GSM480189 extract 1	36.2451	0.001	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	27.1379	0.006	P
	GSM480184 extract 1	11.4681	0.024	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	70.259	0.019	P
	GSM480224 extract 1	87.4256	0.003	P
	GSM480225 extract 1	106.839	0.004	P
	GSM480227 extract 1	81.2585	0.014	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	6.53984	0.068	A
	GSM480166 extract 1	1.58484	0.525	A
	GSM480167 extract 1	4.91675	0.246	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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