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Expression Template: LesAffx.21101.1.S1_at

Template Basic Information

Template name:	LesAffx.21101.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U575460
External db links:	GenBank: BI924446

Annotations for unigene SGN-U575460 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|157340024\|emb\|CAO45701.1\|	867	73.71	1662 bp (78.1%)	2
Description:	unnamed
arabidopsis	blastx	At1G72970.1	785	67.2	1644 bp (77.3%)	2
Description:	Symbols: EDA17, HTH \| HTH (HOTHEAD); aldehyde-lyase \| chr1:27456533-27459367 FORWARD
swissprot	blastx	Q9S746	785	67.2	1644 bp (77.3%)	2
Description:	Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.21101.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.21101.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.21101.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.21101.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.21101.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.21101.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.21101.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.21101.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.21101.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.21101.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.21101.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	176.96	176.96	65.29	0.37
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	8.64	10.52	3.89	0.45
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	8.37	8.63	2.06	0.25
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	3.04	4.33	2.45	0.81
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	31.80	28.67	6.47	0.20
	Gene expression data from Aft red fruit peel	exocarp	3	3	4.54	4.92	2.67	0.59
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	82.84	77.29	31.98	0.39
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	10.38	11.12	2.00	0.19
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	36.31	41.24	28.82	0.79
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	2.72	2.72	3.40	1.25
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2.30	3.06	1.69	0.73
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	2.27	2.27	2.34	1.03
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	10.47	7.28	8.84	0.84
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	97.06	97.06	6.02	0.06
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	20.26	20.26	7.18	0.35
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	164.61	110.35	97.87	0.59
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	156.86	163.75	47.03	0.30
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	10.08	9.29	2.45	0.24
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	7.29	5.01	4.46	0.61
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	5.62	6.28	3.23	0.57
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	3.22	3.22	0.50	0.15
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	4.31	4.31	4.04	0.94
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	6.16	6.36	2.86	0.46
	Gene expression data from Micro-Tom root	root	3	3	22.03	19.41	5.00	0.23

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	223.125	2e-4	P
	GSM480170 extract 1	130.796	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	11.228	0.001	P
	GSM480213 extract 1	4.16941	0.246	A
	GSM480212 extract 1	10.5163	7e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	8.63428	0.219	A
	GSM480180 extract 1	10.289	0.081	A
	GSM480182 extract 1	6.18687	0.219	A
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	4.58422	0.500	A
	GSM480188 extract 1	0.215445	0.696	A
	GSM480187 extract 1	4.32821	0.466	A
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	28.6731	2e-4	P
	GSM480208 extract 1	27.4971	2e-4	P
	GSM480207 extract 1	39.2433	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	1.69872	0.726	A
	GSM480209 extract 1	6.98866	0.219	A
	GSM480211 extract 1	4.92154	0.239	A
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	53.9936	2e-4	P
	GSM480219 extract 1	77.2924	2e-4	P
	GSM480220 extract 1	117.237	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	8.11793	0.068	A
	GSM480223 extract 1	11.91	0.024	P
	GSM480221 extract 1	11.1172	0.038	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	62.3405	2e-4	P
	GSM480190 extract 1	5.34536	0.246	A
	GSM480191 extract 1	41.2363	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	5.11992	0.274	A
	GSM480195 extract 1	0.312375	0.905	A
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	3.06279	0.219	A
	GSM480198 extract 1	3.47827	0.130	A
	GSM480199 extract 1	0.36541	0.805	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	3.92039	0.432	A
	GSM480194 extract 1	0.610487	0.568	A
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	8.72339	0.030	P
	GSM480229 extract 1	23.4046	0.030	P
	GSM480230 extract 1	3.92622	0.568	A
	GSM480228 extract 1	5.84361	0.601	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	92.8056	2e-4	P
	GSM480169 extract 1	101.318	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	15.1793	0.019	P
	GSM480173 extract 1	25.3335	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	277.591	2e-4	P
	GSM480175 extract 1	110.349	2e-4	P
	GSM480174 extract 1	105.884	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	106.761	2e-4	P
	GSM480179 extract 1	200.057	2e-4	P
	GSM480178 extract 1	163.747	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	9.28612	0.219	A
	GSM480202 extract 1	12.8253	0.006	P
	GSM480200 extract 1	8.12511	0.246	A
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	12.4214	0.024	P
	GSM480205 extract 1	4.42578	0.219	A
	GSM480203 extract 1	5.00927	0.130	A
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	8.46805	0.112	A
	GSM480215 extract 1	6.28283	0.130	A
	GSM480216 extract 1	2.1162	0.466	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	3.57668	0.274	A
	GSM480186 extract 1	2.87099	0.466	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1.45878	0.500	A
	GSM480184 extract 1	7.16943	0.056	M
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	5.63584	0.334	A
	GSM480227 extract 1	2.55373	0.195	A
	GSM480225 extract 1	9.38653	0.195	A
	GSM480224 extract 1	7.079	0.334	A
Gene expression data from Micro-Tom root	GSM480167 extract 1	18.8751	2e-4	P
	GSM480165 extract 1	27.7943	2e-4	P
	GSM480166 extract 1	19.4086	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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