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Expression Template: LesAffx.70698.1.S1_at

Template Basic Information

Template name:	LesAffx.70698.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U578123
External db links:	GenBank: AW442777

Annotations for unigene SGN-U578123 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|118483180\|gb\|ABK93494.1\|	203	8e-51	88.07	327 bp (54.2%)	3
Description:	unknown
arabidopsis	blastx	At4G22310.1	198	2e-51	84.4	327 bp (54.2%)	3
Description:	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14695.1); similar to Os08g0344300 &hellip
swissprot	blastx	O95563	114	5e-25	53.47	303 bp (50.2%)	3
Description:	Brain protein 44 OS=Homo sapiens GN=BRP44 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.70698.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.70698.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.70698.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.70698.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.70698.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.70698.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.70698.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.70698.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.70698.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.70698.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.70698.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1273.12	1273.12	186.67	0.15
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	564.96	570.64	31.73	0.06
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	619.92	614.78	30.54	0.05
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	451.30	451.49	0.91	0.00
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	736.57	845.64	226.76	0.31
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	1059.78	1059.78	359.34	0.34
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	1597.50	1495.40	444.42	0.28
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	602.55	577.35	78.53	0.13
	Gene expression data from Aft red fruit peel	exocarp	3	3	1163.41	1176.51	55.19	0.05
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	563.09	566.91	16.21	0.03
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	641.98	639.80	19.30	0.03
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	903.20	928.06	250.60	0.28
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1239.37	1239.37	414.93	0.33
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	823.40	938.96	214.34	0.26
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1596.51	1596.51	386.21	0.24
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1430.58	1540.12	232.45	0.16
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1170.76	1170.76	202.10	0.17
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1053.50	1053.50	20.48	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1270.15	1282.89	130.54	0.10
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1119.86	1115.92	32.79	0.03
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1118.94	1129.95	43.06	0.04
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	933.01	933.01	370.73	0.40
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	767.83	773.93	112.53	0.15
	Gene expression data from Micro-Tom root	root	3	3	1727.54	1733.08	37.87	0.02

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	1405.11	2e-4	P
	GSM480170 extract 1	1141.12	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	570.638	2e-4	P
	GSM480202 extract 1	530.767	2e-4	P
	GSM480200 extract 1	593.464	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	592.265	2e-4	P
	GSM480212 extract 1	614.783	2e-4	P
	GSM480213 extract 1	652.704	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	450.312	2e-4	P
	GSM480216 extract 1	451.491	2e-4	P
	GSM480217 extract 1	452.092	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	475.88	2e-4	P
	GSM480181 extract 1	888.187	2e-4	P
	GSM480182 extract 1	845.636	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	1313.87	2e-4	P
	GSM480183 extract 1	805.691	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	1526.38	2e-4	P
	GSM480224 extract 1	1464.42	2e-4	P
	GSM480227 extract 1	1175.7	2e-4	P
	GSM480225 extract 1	2223.48	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	539.71	2e-4	P
	GSM480207 extract 1	577.349	2e-4	P
	GSM480208 extract 1	690.578	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	1102.85	2e-4	P
	GSM480210 extract 1	1210.87	2e-4	P
	GSM480211 extract 1	1176.51	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	577.044	2e-4	P
	GSM480219 extract 1	566.914	2e-4	P
	GSM480220 extract 1	545.31	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	662.271	2e-4	P
	GSM480223 extract 1	639.804	2e-4	P
	GSM480221 extract 1	623.862	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	641.103	2e-4	P
	GSM480191 extract 1	928.063	2e-4	P
	GSM480192 extract 1	1140.44	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	1532.77	2e-4	P
	GSM480195 extract 1	945.976	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	576.077	2e-4	P
	GSM480198 extract 1	955.169	2e-4	P
	GSM480199 extract 1	938.96	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1323.42	2e-4	P
	GSM480194 extract 1	1869.6	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	1559.61	2e-4	P
	GSM480231 extract 1	1082.45	2e-4	P
	GSM480228 extract 1	1551.37	2e-4	P
	GSM480229 extract 1	1528.87	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1027.86	2e-4	P
	GSM480169 extract 1	1313.67	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1067.98	2e-4	P
	GSM480173 extract 1	1039.02	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	1133.7	2e-4	P
	GSM480175 extract 1	1282.89	2e-4	P
	GSM480174 extract 1	1393.85	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	1154.44	2e-4	P
	GSM480179 extract 1	1115.92	2e-4	P
	GSM480178 extract 1	1089.22	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	1155.42	2e-4	P
	GSM480203 extract 1	1071.44	2e-4	P
	GSM480204 extract 1	1129.95	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	670.862	2e-4	P
	GSM480186 extract 1	1195.15	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	877.187	2e-4	P
	GSM480187 extract 1	652.381	2e-4	P
	GSM480188 extract 1	773.928	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	1687.21	2e-4	P
	GSM480165 extract 1	1733.08	2e-4	P
	GSM480166 extract 1	1762.34	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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