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Expression Template: LesAffx.65398.3.S1_at

Template Basic Information

Template name:	LesAffx.65398.3.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U569038
External db links:	GenBank: AW931157

Annotations for unigene SGN-U569038 (manual: 6 | blast: 3 | go: 1 )

Manual annotations

Based on clone cLES-2-B19, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "phosphatase, protein phosphatase 2A, regulatory subunit" Annotation Keywords: signal transduction; phosphatase; dephosphorylation; serine/threonine phosphatase; regulatory subunit

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|1568511\|emb\|CAA66487.1\|	1107	96.42	1761 bp (73.4%)	2
Description:	protein phosphatase 2A [Nicotiana tabacum]
arabidopsis	blastx	At3G25800.1	1085	93	1758 bp (73.3%)	2
Description:	Symbols: PR 65, PR65, PDF1 \| PDF1 (65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A); prote&hellip
swissprot	blastx	Q38950	1085	93	1758 bp (73.3%)	2
Description:	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis&hellip

GO Terms Annotations

GO:0005488binding

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.65398.3.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.65398.3.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.65398.3.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.65398.3.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.65398.3.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.65398.3.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.65398.3.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.65398.3.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.65398.3.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.65398.3.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.65398.3.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	976.14	976.14	441.23	0.45
	Gene expression data from Aft red fruit flesh	endocarp	3	3	1141.91	1123.79	58.53	0.05
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	1253.83	1253.83	354.02	0.28
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	1265.82	1261.62	21.08	0.02
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	1279.20	1279.20	45.64	0.04
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	463.58	248.79	462.50	1.00
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	509.19	549.31	75.29	0.15
	Gene expression data from Aft red fruit peel	exocarp	3	3	609.30	563.48	110.27	0.18
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	568.26	578.50	44.64	0.08
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	356.35	359.02	28.81	0.08
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	894.07	997.49	292.28	0.33
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	922.59	922.59	237.97	0.26
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1105.30	1113.78	58.11	0.05
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	808.62	808.62	102.52	0.13
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	492.38	375.36	304.60	0.62
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1158.36	1158.36	202.51	0.17
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	445.66	445.66	31.25	0.07
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	730.27	620.19	259.75	0.36
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	987.07	1027.92	113.00	0.11
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	953.83	936.01	208.18	0.22
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	533.67	536.33	68.49	0.13
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	1220.38	1156.12	120.19	0.10
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	1055.39	1172.11	216.13	0.20
	Gene expression data from Micro-Tom root	root	3	3	975.77	991.49	149.09	0.15

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	664.147	2e-4	P
	GSM480171 extract 1	1288.14	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	1123.79	2e-4	P
	GSM480203 extract 1	1094.58	2e-4	P
	GSM480205 extract 1	1207.36	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1504.16	2e-4	P
	GSM480186 extract 1	1003.5	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	1247.16	2e-4	P
	GSM480188 extract 1	1288.68	2e-4	P
	GSM480189 extract 1	1261.62	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	1246.92	2e-4	P
	GSM480183 extract 1	1311.47	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	267.873	2e-4	P
	GSM480225 extract 1	200.625	2e-4	P
	GSM480226 extract 1	229.714	2e-4	P
	GSM480227 extract 1	1156.09	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	549.306	2e-4	P
	GSM480206 extract 1	555.94	2e-4	P
	GSM480207 extract 1	422.338	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	563.485	2e-4	P
	GSM480209 extract 1	735.097	2e-4	P
	GSM480210 extract 1	529.329	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	519.387	2e-4	P
	GSM480220 extract 1	578.502	2e-4	P
	GSM480219 extract 1	606.89	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	383.721	2e-4	P
	GSM480222 extract 1	359.022	2e-4	P
	GSM480223 extract 1	326.293	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	1120.57	2e-4	P
	GSM480190 extract 1	997.494	2e-4	P
	GSM480192 extract 1	564.14	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	1090.86	2e-4	P
	GSM480196 extract 1	754.321	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	1113.78	2e-4	P
	GSM480197 extract 1	1043.42	2e-4	P
	GSM480199 extract 1	1158.71	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	736.123	2e-4	P
	GSM480193 extract 1	881.107	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	384.641	2e-4	P
	GSM480231 extract 1	943.609	2e-4	P
	GSM480230 extract 1	366.083	2e-4	P
	GSM480229 extract 1	275.17	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	1301.55	2e-4	P
	GSM480168 extract 1	1015.16	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	423.559	2e-4	P
	GSM480172 extract 1	467.76	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	620.187	2e-4	P
	GSM480175 extract 1	543.687	2e-4	P
	GSM480176 extract 1	1026.93	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	1027.92	2e-4	P
	GSM480178 extract 1	1073.97	2e-4	P
	GSM480179 extract 1	859.327	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	936.008	2e-4	P
	GSM480202 extract 1	755.128	2e-4	P
	GSM480200 extract 1	1170.35	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	536.327	2e-4	P
	GSM480213 extract 1	600.795	2e-4	P
	GSM480214 extract 1	463.892	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	1359.04	2e-4	P
	GSM480216 extract 1	1145.97	2e-4	P
	GSM480215 extract 1	1156.12	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	1188.07	2e-4	P
	GSM480181 extract 1	1172.11	2e-4	P
	GSM480182 extract 1	805.999	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	991.492	2e-4	P
	GSM480165 extract 1	819.437	2e-4	P
	GSM480167 extract 1	1116.38	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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