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Expression Template: Les.2516.1.S1_at

Template Basic Information

Template name:	Les.2516.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577457
External db links:	GenBank: BM411703

Annotations for unigene SGN-U577457 (manual: 2 | blast: 2 | go: 0 )

Manual annotations

Based on clone cLEG-43-K21, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "DNA cytosine methyltransferase, Zmet3" Annotation Keywords: nucleic acid metabolism; nucleic acid modification; DNA methylation

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|164470590\|gb\|ABY58121.1\|	1120		98.18	1809 bp (79.6%)	2
Description:	putative DNA cytosine 5-methyltransferase [Solanum lycopersicum]
arabidopsis	blastx	At5G14620.1	559	3e-159	54.82	1671 bp (73.5%)	2
Description:	Symbols: DMT7, DRM2 \| DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2) \| chr5:4715432-4718581 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.2516.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.2516.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.2516.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.2516.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.2516.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.2516.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.2516.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.2516.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.2516.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.2516.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.2516.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	105.29	105.29	33.51	0.32
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	121.26	121.61	22.17	0.18
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	70.47	55.85	32.53	0.46
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	98.05	98.05	17.58	0.18
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	73.90	72.68	13.95	0.19
	Gene expression data from Aft red fruit peel	exocarp	3	3	97.72	97.19	4.03	0.04
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	78.31	79.20	2.20	0.03
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	56.36	55.86	4.07	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	59.39	58.99	23.71	0.40
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	101.06	101.06	12.76	0.13
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	101.42	93.63	24.36	0.24
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	71.74	71.74	12.91	0.18
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	54.25	32.71	46.08	0.85
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	93.15	93.15	18.22	0.20
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	80.03	80.03	9.95	0.12
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	83.08	73.73	23.47	0.28
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	88.54	83.15	11.49	0.13
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	68.79	64.55	14.72	0.21
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	91.19	89.04	13.89	0.15
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	71.81	71.09	8.33	0.12
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	91.75	103.66	30.23	0.33
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	75.03	75.03	23.62	0.31
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	48.50	29.07	42.26	0.87
	Gene expression data from Micro-Tom root	root	3	3	91.41	95.30	11.04	0.12

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	81.5946	2e-4	P
	GSM480171 extract 1	128.978	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	121.613	2e-4	P
	GSM480216 extract 1	143.241	2e-4	P
	GSM480217 extract 1	98.9151	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	55.8498	2e-4	P
	GSM480181 extract 1	107.749	2e-4	P
	GSM480182 extract 1	47.8166	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	110.484	2e-4	P
	GSM480186 extract 1	85.6259	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	60.6031	2e-4	P
	GSM480207 extract 1	88.4227	7e-4	P
	GSM480208 extract 1	72.675	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	93.981	2e-4	P
	GSM480210 extract 1	97.1919	2e-4	P
	GSM480211 extract 1	101.98	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	75.7963	2e-4	P
	GSM480220 extract 1	79.1986	2e-4	P
	GSM480218 extract 1	79.9226	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	52.5653	2e-4	P
	GSM480222 extract 1	55.8561	2e-4	P
	GSM480223 extract 1	60.667	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	35.8898	0.001	P
	GSM480191 extract 1	83.3055	2e-4	P
	GSM480192 extract 1	58.9875	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	92.04	2e-4	P
	GSM480196 extract 1	110.085	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	93.6297	2e-4	P
	GSM480199 extract 1	128.73	2e-4	P
	GSM480197 extract 1	81.9076	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	62.6058	2e-4	P
	GSM480194 extract 1	80.8684	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	28.4329	2e-4	P
	GSM480229 extract 1	36.4051	0.008	P
	GSM480230 extract 1	29.0068	2e-4	P
	GSM480231 extract 1	123.158	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	80.2692	2e-4	P
	GSM480169 extract 1	106.039	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	72.992	2e-4	P
	GSM480173 extract 1	87.0619	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	65.7292	2e-4	P
	GSM480175 extract 1	73.7293	0.001	P
	GSM480176 extract 1	109.787	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	101.731	2e-4	P
	GSM480178 extract 1	80.7371	2e-4	P
	GSM480179 extract 1	83.1544	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	85.1582	2e-4	P
	GSM480201 extract 1	64.5529	2e-4	P
	GSM480202 extract 1	56.6525	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	106.027	2e-4	P
	GSM480203 extract 1	89.0377	2e-4	P
	GSM480204 extract 1	78.4966	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	63.8606	2e-4	P
	GSM480213 extract 1	80.4797	2e-4	P
	GSM480214 extract 1	71.089	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	57.3801	2e-4	P
	GSM480188 extract 1	103.658	2e-4	P
	GSM480189 extract 1	114.218	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	91.7319	2e-4	P
	GSM480183 extract 1	58.3271	7e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	31.9884	7e-4	P
	GSM480227 extract 1	111.689	2e-4	P
	GSM480224 extract 1	24.1682	0.001	P
	GSM480225 extract 1	26.1615	0.002	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	78.9484	7e-4	P
	GSM480166 extract 1	95.3006	2e-4	P
	GSM480167 extract 1	99.9761	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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