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Expression Template: Les.2780.1.S1_at

Template Basic Information

Template name:	Les.2780.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U562752
External db links:	GenBank: AW037396

Annotations for unigene SGN-U562752 (manual: 0 | blast: 3 | go: 5 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|118483404\|gb\|ABK93602.1\|	166	1e-39	94.32	264 bp (39.8%)	3
Description:	unknown
arabidopsis	blastx	At2G18740.1	161	3e-40	92.05	264 bp (39.8%)	3
Description:	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative \| chr&hellip
swissprot	blastx	P62303	126	1e-28	71.6	243 bp (36.6%)	3
Description:	Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1

GO Terms Annotations

GO:0005634nucleus
GO:0030529ribonucleoprotein complex
GO:0006397mRNA processing
GO:0005732small nucleolar ribonucleoprotein complex
GO:0016071mRNA metabolism

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.2780.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.2780.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.2780.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.2780.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.2780.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.2780.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.2780.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.2780.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.2780.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.2780.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.2780.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	153.14	153.14	55.79	0.36
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	135.70	140.82	9.45	0.07
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	180.34	189.92	21.96	0.12
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	193.75	193.75	39.53	0.20
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	105.69	98.06	15.20	0.14
	Gene expression data from Aft red fruit peel	exocarp	3	3	186.07	182.66	11.45	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	125.16	116.07	19.65	0.16
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	161.40	163.71	6.15	0.04
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	134.51	138.44	30.51	0.23
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	162.15	162.15	7.92	0.05
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	202.64	201.82	3.55	0.02
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	147.38	147.38	10.75	0.07
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	147.35	143.77	37.29	0.25
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	212.71	212.71	9.59	0.05
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	159.57	159.57	16.69	0.10
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	157.96	165.06	21.22	0.13
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	145.32	137.78	13.89	0.10
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	239.28	253.76	31.21	0.13
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	151.64	146.18	10.00	0.07
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	120.40	126.99	21.99	0.18
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	118.27	111.85	23.81	0.20
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	188.94	188.94	71.76	0.38
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	227.21	220.82	31.36	0.14
	Gene expression data from Micro-Tom root	root	3	3	171.79	156.73	32.96	0.19

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	113.694	2e-4	P
	GSM480170 extract 1	192.593	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	124.802	2e-4	P
	GSM480201 extract 1	140.824	2e-4	P
	GSM480202 extract 1	141.489	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	189.919	2e-4	P
	GSM480189 extract 1	195.883	2e-4	P
	GSM480187 extract 1	155.21	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	165.794	2e-4	P
	GSM480184 extract 1	221.699	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	98.0611	2e-4	P
	GSM480207 extract 1	95.807	2e-4	P
	GSM480208 extract 1	123.194	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	198.835	2e-4	P
	GSM480211 extract 1	182.664	2e-4	P
	GSM480209 extract 1	176.697	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	147.704	2e-4	P
	GSM480220 extract 1	111.696	2e-4	P
	GSM480218 extract 1	116.072	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	154.422	2e-4	P
	GSM480222 extract 1	163.714	2e-4	P
	GSM480223 extract 1	166.052	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	102.227	2e-4	P
	GSM480191 extract 1	138.438	2e-4	P
	GSM480192 extract 1	162.877	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	167.756	2e-4	P
	GSM480195 extract 1	156.553	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	201.817	2e-4	P
	GSM480198 extract 1	206.525	2e-4	P
	GSM480199 extract 1	199.563	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	154.98	2e-4	P
	GSM480194 extract 1	139.775	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	138.014	7e-4	P
	GSM480229 extract 1	105.919	2e-4	P
	GSM480230 extract 1	149.523	2e-4	P
	GSM480231 extract 1	195.961	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	205.925	2e-4	P
	GSM480168 extract 1	219.486	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	171.371	2e-4	P
	GSM480173 extract 1	147.767	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	134.103	2e-4	P
	GSM480174 extract 1	165.057	2e-4	P
	GSM480176 extract 1	174.735	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	136.838	2e-4	P
	GSM480179 extract 1	161.345	2e-4	P
	GSM480177 extract 1	137.776	7e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	203.455	2e-4	P
	GSM480203 extract 1	260.625	2e-4	P
	GSM480205 extract 1	253.757	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	163.175	2e-4	P
	GSM480212 extract 1	145.556	2e-4	P
	GSM480213 extract 1	146.183	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	126.991	2e-4	P
	GSM480216 extract 1	138.347	2e-4	P
	GSM480217 extract 1	95.8679	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	111.847	2e-4	P
	GSM480180 extract 1	98.3279	2e-4	P
	GSM480182 extract 1	144.628	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	138.196	2e-4	P
	GSM480186 extract 1	239.68	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	232.399	2e-4	P
	GSM480225 extract 1	209.236	2e-4	P
	GSM480226 extract 1	198.118	2e-4	P
	GSM480227 extract 1	269.084	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	209.587	2e-4	P
	GSM480165 extract 1	156.726	2e-4	P
	GSM480166 extract 1	149.06	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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