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Expression Template: Les.463.2.S1_at

Template Basic Information

Template name:	Les.463.2.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U572742
External db links:	GenBank: BE435274

Annotations for unigene SGN-U572742 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEF-49-B9, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "acetolactate synthase, SuRA" Annotation Keywords: other; enzyme; lyase

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|124369\|sp\|P09114\|ILVB2_TOBAC	1169	91.54	1974 bp (88.5%)	1
Description:	RecName:
arabidopsis	blastx	At3G48560.1	1011	82.64	1797 bp (80.6%)	1
Description:	Symbols: ALS, AHAS, TZP5, IMR1, CSR1 \| CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) \| chr3:1&hellip
swissprot	blastx	P09114	1169	91.54	1974 bp (88.5%)	1
Description:	Acetolactate synthase 2, chloroplastic OS=Nicotiana tabacum GN=ALS SURB PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.463.2.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.463.2.S1_at:ProbePair9	PM	data not available	data not available	data not available
Les.463.2.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.463.2.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.463.2.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.463.2.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.463.2.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.463.2.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.463.2.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.463.2.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.463.2.S1_at:ProbePair7	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1931.24	1931.24	539.66	0.28
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	2310.86	2319.02	84.06	0.04
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	1366.41	1219.85	354.33	0.26
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	716.72	716.72	30.99	0.04
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	356.70	199.24	346.07	0.97
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1835.24	1838.09	20.84	0.01
	Gene expression data from Aft red fruit peel	exocarp	3	3	571.32	548.36	45.21	0.08
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	2001.08	1989.66	41.83	0.02
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	644.30	653.16	46.75	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1089.17	1005.66	192.27	0.18
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	502.65	502.65	165.51	0.33
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	598.75	594.52	96.38	0.16
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	505.86	505.86	91.11	0.18
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	542.73	422.24	284.68	0.52
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1664.74	1664.74	230.57	0.14
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	2178.75	2178.75	7.69	0.00
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1611.32	1466.47	326.20	0.20
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1495.18	1428.36	380.26	0.25
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	2185.87	2197.78	104.10	0.05
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	398.34	421.78	48.27	0.12
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	625.10	633.68	29.35	0.05
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	667.28	625.64	79.67	0.12
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	1066.92	1066.92	154.29	0.14
	Gene expression data from Micro-Tom root	root	3	3	591.05	581.00	70.72	0.12

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	2312.84	2e-4	P
	GSM480170 extract 1	1549.64	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	2390.54	2e-4	P
	GSM480213 extract 1	2319.02	2e-4	P
	GSM480214 extract 1	2223.01	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	1770.51	2e-4	P
	GSM480181 extract 1	1219.85	2e-4	P
	GSM480182 extract 1	1108.88	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	738.634	2e-4	P
	GSM480185 extract 1	694.802	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	153.787	2e-4	P
	GSM480226 extract 1	213.089	2e-4	P
	GSM480224 extract 1	185.401	2e-4	P
	GSM480227 extract 1	874.535	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	1854.51	2e-4	P
	GSM480207 extract 1	1838.09	2e-4	P
	GSM480208 extract 1	1813.13	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	623.405	2e-4	P
	GSM480210 extract 1	548.358	2e-4	P
	GSM480211 extract 1	542.19	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	1989.66	2e-4	P
	GSM480219 extract 1	1966.15	2e-4	P
	GSM480220 extract 1	2047.43	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	593.745	2e-4	P
	GSM480222 extract 1	685.977	2e-4	P
	GSM480223 extract 1	653.163	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	1309.07	2e-4	P
	GSM480191 extract 1	1005.66	2e-4	P
	GSM480192 extract 1	952.77	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	385.62	2e-4	P
	GSM480196 extract 1	619.689	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	504.555	2e-4	P
	GSM480198 extract 1	594.521	2e-4	P
	GSM480199 extract 1	697.178	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	570.286	2e-4	P
	GSM480193 extract 1	441.442	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	360.958	2e-4	P
	GSM480231 extract 1	965.462	2e-4	P
	GSM480229 extract 1	387.926	2e-4	P
	GSM480228 extract 1	456.562	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	1827.78	2e-4	P
	GSM480168 extract 1	1501.71	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	2173.31	2e-4	P
	GSM480173 extract 1	2184.19	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	1382.64	2e-4	P
	GSM480175 extract 1	1466.47	2e-4	P
	GSM480176 extract 1	1984.86	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	1152.76	2e-4	P
	GSM480177 extract 1	1904.42	2e-4	P
	GSM480178 extract 1	1428.36	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	2283.5	2e-4	P
	GSM480201 extract 1	2197.78	2e-4	P
	GSM480200 extract 1	2076.33	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	421.779	2e-4	P
	GSM480204 extract 1	342.825	2e-4	P
	GSM480203 extract 1	430.419	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	592.422	2e-4	P
	GSM480217 extract 1	633.685	2e-4	P
	GSM480215 extract 1	649.198	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	617.062	2e-4	P
	GSM480188 extract 1	625.64	2e-4	P
	GSM480189 extract 1	759.141	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	957.821	2e-4	P
	GSM480184 extract 1	1176.02	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	525.885	2e-4	P
	GSM480166 extract 1	666.257	2e-4	P
	GSM480167 extract 1	581.001	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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