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Expression Template: LesAffx.31904.2.S1_at

Template Basic Information

Template name:	LesAffx.31904.2.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U574142
External db links:	GenBank: BI211191

Annotations for unigene SGN-U574142 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157357153\|emb\|CAO63647.1\|	540	1e-151	86.58	891 bp (70.8%)	1
Description:	unnamed
arabidopsis	blastx	At1G63000.1	513	7e-146	83.45	888 bp (70.6%)	1
Description:	Symbols: NRS/ER \| NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE) \| chr1:23346175-23&hellip
swissprot	blastx	Q9SYM5	498	2e-140	80.27	882 bp (70.1%)	1
Description:	Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.31904.2.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.31904.2.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.31904.2.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.31904.2.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.31904.2.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.31904.2.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.31904.2.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.31904.2.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.31904.2.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.31904.2.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.31904.2.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	774.84	774.84	2.56	0.00
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1084.61	1017.29	273.73	0.25
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	798.50	823.42	91.97	0.12
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	73.55	73.55	17.15	0.23
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	42.24	40.52	15.50	0.37
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	665.62	637.29	77.52	0.12
	Gene expression data from Aft red fruit peel	exocarp	3	3	87.76	77.99	24.89	0.28
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	854.39	793.50	110.80	0.13
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	56.46	51.57	11.59	0.21
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	943.45	864.81	200.28	0.21
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	68.45	68.45	44.03	0.64
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	72.03	73.42	17.86	0.25
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	165.76	165.76	39.52	0.24
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	92.87	93.09	14.94	0.16
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	2098.59	2098.59	49.24	0.02
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	447.98	447.98	10.65	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	453.52	431.09	53.73	0.12
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	650.05	634.05	43.77	0.07
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	59.26	50.04	16.91	0.29
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	46.65	44.79	6.30	0.14
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	846.23	725.89	255.21	0.30
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	74.32	76.82	9.28	0.12
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	204.33	204.33	93.47	0.46
	Gene expression data from Micro-Tom root	root	3	3	2263.49	2306.97	94.49	0.04

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	773.03	2e-4	P
	GSM480170 extract 1	776.655	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	1017.29	2e-4	P
	GSM480202 extract 1	1385.72	2e-4	P
	GSM480200 extract 1	850.815	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	823.419	2e-4	P
	GSM480212 extract 1	696.638	2e-4	P
	GSM480213 extract 1	875.449	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	85.6844	2e-4	P
	GSM480186 extract 1	61.4245	7e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	33.5766	0.001	P
	GSM480224 extract 1	26.4618	0.011	P
	GSM480226 extract 1	47.458	2e-4	P
	GSM480227 extract 1	61.4718	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	637.294	2e-4	P
	GSM480208 extract 1	753.324	2e-4	P
	GSM480207 extract 1	606.247	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	69.2319	2e-4	P
	GSM480209 extract 1	77.9899	7e-4	P
	GSM480211 extract 1	116.051	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	982.285	2e-4	P
	GSM480220 extract 1	793.504	2e-4	P
	GSM480218 extract 1	787.394	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	48.1206	7e-4	P
	GSM480223 extract 1	69.696	0.001	P
	GSM480222 extract 1	51.5676	0.002	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	864.811	2e-4	P
	GSM480190 extract 1	1171.11	2e-4	P
	GSM480191 extract 1	794.427	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	37.3169	2e-4	P
	GSM480195 extract 1	99.581	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	89.16	2e-4	P
	GSM480198 extract 1	53.5112	2e-4	P
	GSM480199 extract 1	73.4185	7e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	137.817	2e-4	P
	GSM480194 extract 1	193.707	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	83.4259	0.001	P
	GSM480228 extract 1	102.753	7e-4	P
	GSM480230 extract 1	77.1181	0.019	P
	GSM480231 extract 1	108.181	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	2063.77	2e-4	P
	GSM480169 extract 1	2133.41	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	440.447	2e-4	P
	GSM480173 extract 1	455.505	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	514.828	2e-4	P
	GSM480175 extract 1	414.643	2e-4	P
	GSM480174 extract 1	431.087	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	634.049	2e-4	P
	GSM480179 extract 1	616.537	2e-4	P
	GSM480178 extract 1	699.574	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	50.0435	2e-4	P
	GSM480204 extract 1	48.9661	2e-4	P
	GSM480203 extract 1	78.7798	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	53.6735	0.002	P
	GSM480217 extract 1	41.487	7e-4	P
	GSM480215 extract 1	44.7873	0.002	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	725.891	2e-4	P
	GSM480181 extract 1	673.428	2e-4	P
	GSM480182 extract 1	1139.36	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	76.8153	7e-4	P
	GSM480187 extract 1	64.0445	2e-4	P
	GSM480188 extract 1	82.0958	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	138.238	2e-4	P
	GSM480184 extract 1	270.422	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	2328.41	2e-4	P
	GSM480165 extract 1	2306.97	2e-4	P
	GSM480166 extract 1	2155.08	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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