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Expression Template: Les.3259.2.S1_at

Template Basic Information

Template name:	Les.3259.2.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577529
External db links:	GenBank: AI774956

Annotations for unigene SGN-U577529 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|118484792\|gb\|ABK94264.1\|	209	1e-52	70.06	471 bp (61.1%)	2
Description:	unknown
arabidopsis	blastx	At3G07480.1	198	3e-51	77.5	360 bp (46.7%)	2
Description:	electron carrier/ iron ion binding \| chr3:2389032-2389511 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3259.2.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.3259.2.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.3259.2.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.3259.2.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.3259.2.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.3259.2.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.3259.2.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.3259.2.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.3259.2.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.3259.2.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.3259.2.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	801.80	801.80	118.44	0.15
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	781.20	793.03	36.15	0.05
	Gene expression data from Aft red fruit flesh	endocarp	3	3	1491.95	1513.07	45.12	0.03
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	1064.90	1054.74	55.84	0.05
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	1744.68	1744.68	104.87	0.06
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	967.22	1078.69	222.63	0.23
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	1682.64	1682.64	131.87	0.08
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	648.15	673.75	47.39	0.07
	Gene expression data from Aft red fruit peel	exocarp	3	3	1008.44	996.00	41.26	0.04
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	762.42	757.52	30.71	0.04
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	766.27	785.27	50.37	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	809.81	794.72	78.49	0.10
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1610.42	1610.42	263.03	0.16
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1162.36	1227.08	154.74	0.13
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1627.22	1627.22	16.84	0.01
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1364.06	1379.06	61.94	0.05
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	908.04	908.04	110.11	0.12
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	681.43	681.43	15.24	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	670.18	656.82	25.25	0.04
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	680.73	672.66	16.62	0.02
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	852.97	841.60	20.62	0.02
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	950.52	936.57	45.90	0.05
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	1101.06	1036.54	336.14	0.31
	Gene expression data from Micro-Tom root	root	3	3	1319.11	1364.48	78.76	0.06

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	718.051	2e-4	P
	GSM480171 extract 1	885.553	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	809.956	2e-4	P
	GSM480202 extract 1	740.626	2e-4	P
	GSM480201 extract 1	793.029	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	1522.63	2e-4	P
	GSM480203 extract 1	1440.14	2e-4	P
	GSM480205 extract 1	1513.07	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	1054.74	2e-4	P
	GSM480217 extract 1	1014.84	2e-4	P
	GSM480215 extract 1	1125.13	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1818.83	2e-4	P
	GSM480186 extract 1	1670.52	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	710.87	2e-4	P
	GSM480188 extract 1	1112.09	2e-4	P
	GSM480189 extract 1	1078.69	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	1589.4	2e-4	P
	GSM480183 extract 1	1775.89	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	677.233	2e-4	P
	GSM480206 extract 1	593.462	2e-4	P
	GSM480207 extract 1	673.754	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	1054.49	2e-4	P
	GSM480209 extract 1	974.834	2e-4	P
	GSM480210 extract 1	996.001	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	734.457	2e-4	P
	GSM480219 extract 1	795.278	2e-4	P
	GSM480218 extract 1	757.517	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	785.268	2e-4	P
	GSM480223 extract 1	709.167	2e-4	P
	GSM480222 extract 1	804.379	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	739.953	2e-4	P
	GSM480192 extract 1	794.717	2e-4	P
	GSM480190 extract 1	894.748	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	1424.43	2e-4	P
	GSM480196 extract 1	1796.41	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	1227.08	2e-4	P
	GSM480199 extract 1	1274.23	2e-4	P
	GSM480197 extract 1	985.77	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	1615.31	2e-4	P
	GSM480193 extract 1	1639.13	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	1373.87	2e-4	P
	GSM480230 extract 1	1421.7	2e-4	P
	GSM480228 extract 1	1384.24	2e-4	P
	GSM480231 extract 1	1276.41	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	830.179	2e-4	P
	GSM480169 extract 1	985.894	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	670.658	2e-4	P
	GSM480173 extract 1	692.204	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	699.309	2e-4	P
	GSM480174 extract 1	656.82	2e-4	P
	GSM480175 extract 1	654.418	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	669.678	2e-4	P
	GSM480178 extract 1	699.837	2e-4	P
	GSM480179 extract 1	672.665	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	840.545	2e-4	P
	GSM480213 extract 1	876.77	2e-4	P
	GSM480214 extract 1	841.604	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	936.573	2e-4	P
	GSM480181 extract 1	913.202	2e-4	P
	GSM480182 extract 1	1001.77	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	1129.57	2e-4	P
	GSM480225 extract 1	775.072	2e-4	P
	GSM480226 extract 1	943.505	2e-4	P
	GSM480227 extract 1	1556.11	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	1228.17	2e-4	P
	GSM480166 extract 1	1364.68	2e-4	P
	GSM480167 extract 1	1364.48	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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