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Expression Template: Les.842.2.S1_a_at

Template Basic Information

Template name:	Les.842.2.S1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U582049
External db links:	GenBank: AI896617

Annotations for unigene SGN-U582049 (manual: 2 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLES-20-D24, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: arbutin synthase Annotation Keywords: other; enzyme; synthase

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|209954731\|dbj\|BAG80556.1\|	781		84.95	1389 bp (75.6%)	2
Description:	UDP-glucose:glucosyltransferase [Lycium barbarum]
arabidopsis	blastx	At4G01070.1	560	1e-159	60.54	1425 bp (77.6%)	2
Description:	UDP-glucoronosyl/UDP-glucosyl transferase family protein \| chr4:461858-463300 REVERSE
swissprot	blastx	Q9AR73	653		68.95	1401 bp (76.3%)	2
Description:	Hydroquinone glucosyltransferase OS=Rauvolfia serpentina GN=AS PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (10)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.842.2.S1_a_at:ProbePair0	PM	data not available	data not available	data not available
Les.842.2.S1_a_at:ProbePair1	PM	data not available	data not available	data not available
Les.842.2.S1_a_at:ProbePair2	PM	data not available	data not available	data not available
Les.842.2.S1_a_at:ProbePair3	PM	data not available	data not available	data not available
Les.842.2.S1_a_at:ProbePair4	PM	data not available	data not available	data not available
Les.842.2.S1_a_at:ProbePair5	PM	data not available	data not available	data not available
Les.842.2.S1_a_at:ProbePair6	PM	data not available	data not available	data not available
Les.842.2.S1_a_at:ProbePair7	PM	data not available	data not available	data not available
Les.842.2.S1_a_at:ProbePair8	PM	data not available	data not available	data not available
Les.842.2.S1_a_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	947.45	947.45	192.19	0.20
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	536.51	538.63	37.99	0.07
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	1729.82	1694.44	1027.55	0.59
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	15.68	15.68	14.08	0.90
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	600.83	612.29	22.76	0.04
	Gene expression data from Aft red fruit peel	exocarp	3	3	73.78	72.46	9.47	0.13
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	407.06	411.36	20.01	0.05
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	2.33	1.80	2.01	0.86
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	2318.21	1565.84	1310.66	0.57
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	10.37	10.37	8.73	0.84
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	32.91	18.52	30.14	0.92
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	88.48	88.48	101.09	1.14
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	11.21	10.44	4.57	0.41
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1262.36	1262.36	3.12	0.00
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	631.92	631.92	2.69	0.00
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	876.26	810.44	160.71	0.18
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	976.41	923.04	113.84	0.12
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	5.80	6.81	2.49	0.43
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	341.87	372.70	88.75	0.26
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	3.72	4.34	2.93	0.79
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	32.57	16.67	32.44	1.00
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	230.77	230.77	236.60	1.03
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	4.29	3.77	4.18	0.98
	Gene expression data from Micro-Tom root	root	3	3	862.89	914.18	89.08	0.10

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	811.549	5e-4	P
	GSM480171 extract 1	1083.35	5e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	538.628	5e-4	P
	GSM480201 extract 1	497.498	5e-4	P
	GSM480202 extract 1	573.395	5e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	1694.44	5e-4	P
	GSM480180 extract 1	2774.6	5e-4	P
	GSM480181 extract 1	720.42	5e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	5.71841	0.059	M
	GSM480185 extract 1	25.6375	5e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	615.571	5e-4	P
	GSM480208 extract 1	612.294	5e-4	P
	GSM480206 extract 1	574.616	5e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	65.0469	5e-4	P
	GSM480209 extract 1	72.4582	5e-4	P
	GSM480210 extract 1	83.8393	5e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	424.58	5e-4	P
	GSM480220 extract 1	385.254	5e-4	P
	GSM480218 extract 1	411.357	5e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	4.55511	0.231	A
	GSM480222 extract 1	1.79515	0.738	A
	GSM480221 extract 1	0.652032	0.826	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	3831.62	5e-4	P
	GSM480191 extract 1	1557.18	5e-4	P
	GSM480192 extract 1	1565.84	5e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	16.5425	0.012	P
	GSM480196 extract 1	4.19085	0.174	A
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	12.6582	0.028	P
	GSM480199 extract 1	67.5514	5e-4	P
	GSM480197 extract 1	18.5211	0.006	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	16.999	5e-4	P
	GSM480193 extract 1	159.96	5e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	17.1464	0.004	P
	GSM480230 extract 1	8.58753	0.149	A
	GSM480231 extract 1	6.81152	0.073	A
	GSM480229 extract 1	12.2941	0.073	A
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	1260.16	5e-4	P
	GSM480168 extract 1	1264.57	5e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	633.823	5e-4	P
	GSM480172 extract 1	630.023	5e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	810.445	5e-4	P
	GSM480175 extract 1	758.911	5e-4	P
	GSM480176 extract 1	1059.43	5e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	923.035	5e-4	P
	GSM480179 extract 1	899.066	5e-4	P
	GSM480177 extract 1	1107.13	5e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	6.81405	0.103	A
	GSM480204 extract 1	2.96582	0.558	A
	GSM480205 extract 1	7.63117	0.016	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	411.097	5e-4	P
	GSM480213 extract 1	241.812	5e-4	P
	GSM480214 extract 1	372.697	5e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	4.33792	0.106	A
	GSM480216 extract 1	0.525665	0.979	A
	GSM480217 extract 1	6.28965	0.059	M
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	11.1589	0.028	P
	GSM480188 extract 1	16.6679	5e-4	P
	GSM480189 extract 1	69.8904	5e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	398.067	5e-4	P
	GSM480184 extract 1	63.4663	5e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	0.49968	0.923	A
	GSM480226 extract 1	6.46083	0.295	A
	GSM480227 extract 1	9.10275	0.088	A
	GSM480225 extract 1	1.0816	0.873	A
Gene expression data from Micro-Tom root	GSM480165 extract 1	760.021	5e-4	P
	GSM480166 extract 1	914.458	5e-4	P
	GSM480167 extract 1	914.177	5e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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