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Expression Template: LesAffx.20849.2.S1_at

Template Basic Information

Template name:	LesAffx.20849.2.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U566430
External db links:	GenBank: BG123674

Annotations for unigene SGN-U566430 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157343643\|emb\|CAO68149.1\|	382	3e-104	74.8	738 bp (52.2%)	2
Description:	unnamed
arabidopsis	blastx	At3G18165.1	336	2e-92	68.7	729 bp (51.6%)	2
Description:	similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81183.1); cont&hellip
swissprot	blastx	Q6PBE2	133	2e-30	35.38	636 bp (45.0%)	2
Description:	Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis GN=bcas2 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.20849.2.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.20849.2.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.20849.2.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.20849.2.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.20849.2.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.20849.2.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.20849.2.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.20849.2.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.20849.2.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.20849.2.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.20849.2.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	317.83	317.83	3.11	0.01
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	294.71	289.65	27.58	0.09
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	376.13	376.13	45.12	0.12
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	263.89	242.24	78.64	0.30
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	560.97	559.22	23.23	0.04
	Gene expression data from Aft red fruit peel	exocarp	3	3	367.88	373.22	14.10	0.04
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	564.35	576.81	39.59	0.07
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	418.27	415.97	11.05	0.03
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	305.30	294.32	22.50	0.07
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	323.60	323.60	60.75	0.19
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	296.09	294.85	18.31	0.06
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	298.37	298.37	31.68	0.11
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	249.63	232.83	51.88	0.21
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	471.96	471.96	24.46	0.05
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	380.62	380.62	23.87	0.06
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	341.28	332.05	48.88	0.14
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	295.30	309.38	29.58	0.10
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	553.92	560.92	89.35	0.16
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	390.95	392.55	18.46	0.05
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	617.23	618.46	4.21	0.01
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	349.16	346.79	40.34	0.12
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	445.26	459.29	68.83	0.15
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	323.88	323.88	49.65	0.15
	Gene expression data from Micro-Tom root	root	3	3	430.30	419.60	19.33	0.04

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	320.031	2e-4	P
	GSM480171 extract 1	315.628	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	270.004	2e-4	P
	GSM480188 extract 1	289.649	2e-4	P
	GSM480189 extract 1	324.468	7e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	344.22	2e-4	P
	GSM480184 extract 1	408.031	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	228.697	7e-4	P
	GSM480227 extract 1	375.84	2e-4	P
	GSM480225 extract 1	195.233	2e-4	P
	GSM480226 extract 1	255.775	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	538.656	2e-4	P
	GSM480206 extract 1	585.024	2e-4	P
	GSM480208 extract 1	559.22	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	373.216	2e-4	P
	GSM480211 extract 1	378.534	2e-4	P
	GSM480209 extract 1	351.899	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	596.205	2e-4	P
	GSM480220 extract 1	576.808	2e-4	P
	GSM480218 extract 1	520.026	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	415.971	2e-4	P
	GSM480222 extract 1	408.549	2e-4	P
	GSM480223 extract 1	430.285	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	290.404	2e-4	P
	GSM480190 extract 1	331.187	2e-4	P
	GSM480191 extract 1	294.315	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	280.648	2e-4	P
	GSM480196 extract 1	366.556	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	278.432	2e-4	P
	GSM480197 extract 1	294.852	2e-4	P
	GSM480199 extract 1	314.99	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	275.973	2e-4	P
	GSM480194 extract 1	320.776	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	231.498	2e-4	P
	GSM480229 extract 1	207.516	7e-4	P
	GSM480231 extract 1	325.351	2e-4	P
	GSM480228 extract 1	234.167	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	489.256	2e-4	P
	GSM480169 extract 1	454.66	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	397.496	2e-4	P
	GSM480173 extract 1	363.745	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	297.669	2e-4	P
	GSM480176 extract 1	394.105	2e-4	P
	GSM480174 extract 1	332.053	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	315.208	2e-4	P
	GSM480178 extract 1	261.311	2e-4	P
	GSM480179 extract 1	309.378	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	560.917	2e-4	P
	GSM480200 extract 1	461.27	2e-4	P
	GSM480202 extract 1	639.564	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	371.743	2e-4	P
	GSM480205 extract 1	392.551	2e-4	P
	GSM480203 extract 1	408.56	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	620.693	2e-4	P
	GSM480212 extract 1	618.46	2e-4	P
	GSM480213 extract 1	612.55	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	310.053	2e-4	P
	GSM480215 extract 1	390.634	2e-4	P
	GSM480216 extract 1	346.786	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	370.497	2e-4	P
	GSM480181 extract 1	459.289	2e-4	P
	GSM480180 extract 1	506	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	288.773	2e-4	P
	GSM480186 extract 1	358.987	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	418.678	2e-4	P
	GSM480165 extract 1	419.603	2e-4	P
	GSM480167 extract 1	452.612	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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