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Expression Template: LesAffx.62202.2.S1_at

Template Basic Information

Template name:	LesAffx.62202.2.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U583946
External db links:	GenBank: BI206063

Annotations for unigene SGN-U583946 (manual: 1 | blast: 2 | go: 2 )

Manual annotations

Based on clone cLEC-6-O7, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: root border cell-specific protein Annotation Keywords: other

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|82400120\|gb\|ABB72799.1\|	529	2e-148	94.08	963 bp (79.7%)	1
Description:	root border cell-specific protein-like protein [Solanum tuberosum]
arabidopsis	blastx	At3G03890.1	384	6e-107	71	798 bp (66.0%)	1
Description:	FMN binding \| chr3:999674-1002003 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

GO:0010181FMN binding
GO:0004733pyridoxamine-phosphate oxidase activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.62202.2.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.62202.2.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.62202.2.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.62202.2.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.62202.2.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.62202.2.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.62202.2.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.62202.2.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.62202.2.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.62202.2.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.62202.2.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	298.25	298.25	21.41	0.07
	Gene expression data from Aft red fruit flesh	endocarp	3	3	286.69	287.65	9.48	0.03
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	235.82	250.56	26.37	0.11
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	333.15	330.78	9.97	0.03
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	287.75	287.75	74.85	0.26
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	161.45	148.75	23.11	0.14
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	222.18	208.35	75.44	0.34
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	211.95	211.96	5.51	0.03
	Gene expression data from Aft red fruit peel	exocarp	3	3	325.99	336.16	38.13	0.12
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	244.82	239.06	11.68	0.05
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	369.63	370.63	3.85	0.01
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	75.72	70.23	34.42	0.45
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	365.99	365.99	63.62	0.17
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	164.79	151.10	28.30	0.17
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	237.35	237.35	9.72	0.04
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	226.93	200.88	78.21	0.34
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	182.80	182.80	20.17	0.11
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	353.46	353.46	26.30	0.07
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	265.72	261.59	24.99	0.09
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	208.38	221.03	26.69	0.13
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	171.60	172.06	10.12	0.06
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	125.07	129.58	40.04	0.32
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	243.04	243.04	16.76	0.07
	Gene expression data from Micro-Tom root	root	3	3	99.49	96.25	11.45	0.12

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	313.384	2e-4	P
	GSM480171 extract 1	283.109	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	276.768	2e-4	P
	GSM480205 extract 1	295.647	2e-4	P
	GSM480204 extract 1	287.649	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	250.557	2e-4	P
	GSM480212 extract 1	205.369	2e-4	P
	GSM480213 extract 1	251.523	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	344.09	2e-4	P
	GSM480216 extract 1	324.586	2e-4	P
	GSM480217 extract 1	330.785	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	340.676	2e-4	P
	GSM480185 extract 1	234.816	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	147.467	2e-4	P
	GSM480187 extract 1	188.12	2e-4	P
	GSM480188 extract 1	148.752	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	214.178	2e-4	P
	GSM480227 extract 1	326.12	2e-4	P
	GSM480226 extract 1	202.52	2e-4	P
	GSM480225 extract 1	145.883	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	206.443	2e-4	P
	GSM480206 extract 1	211.961	2e-4	P
	GSM480208 extract 1	217.453	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	336.155	2e-4	P
	GSM480209 extract 1	283.809	2e-4	P
	GSM480210 extract 1	358.014	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	258.265	2e-4	P
	GSM480218 extract 1	239.055	2e-4	P
	GSM480220 extract 1	237.142	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	372.871	2e-4	P
	GSM480222 extract 1	370.631	2e-4	P
	GSM480221 extract 1	365.375	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	44.3822	2e-4	P
	GSM480191 extract 1	112.555	2e-4	P
	GSM480192 extract 1	70.2327	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	321.006	2e-4	P
	GSM480196 extract 1	410.978	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	151.103	2e-4	P
	GSM480199 extract 1	145.922	2e-4	P
	GSM480197 extract 1	197.331	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	244.226	2e-4	P
	GSM480193 extract 1	230.475	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	223.824	2e-4	P
	GSM480230 extract 1	177.926	2e-4	P
	GSM480231 extract 1	338.373	2e-4	P
	GSM480229 extract 1	167.59	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	197.067	2e-4	P
	GSM480168 extract 1	168.538	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	372.059	2e-4	P
	GSM480172 extract 1	334.867	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	261.587	2e-4	P
	GSM480176 extract 1	243.062	2e-4	P
	GSM480175 extract 1	292.525	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	177.715	2e-4	P
	GSM480177 extract 1	221.03	2e-4	P
	GSM480179 extract 1	226.398	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	181.479	2e-4	P
	GSM480201 extract 1	161.257	2e-4	P
	GSM480200 extract 1	172.065	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	82.9667	2e-4	P
	GSM480180 extract 1	129.584	2e-4	P
	GSM480181 extract 1	162.665	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	231.188	2e-4	P
	GSM480184 extract 1	254.896	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	90.0097	2e-4	P
	GSM480166 extract 1	96.246	2e-4	P
	GSM480167 extract 1	112.205	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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