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Expression Template: LesAffx.17387.1.S1_at

Template Basic Information

Template name:	LesAffx.17387.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U586725
External db links:	GenBank: BM534931

Annotations for unigene SGN-U586725 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147807864\|emb\|CAN66433.1\|	226	8e-58	71.94	417 bp (77.7%)	-1
Description:	hypothetical
arabidopsis	blastx	At1G06620.1	207	2e-54	66.19	417 bp (77.7%)	-1
Description:	2-oxoglutarate-dependent dioxygenase, putative \| chr1:2025617-2027093 FORWARD
swissprot	blastx	Q84MB3	207	2e-53	66.19	417 bp (77.7%)	-1
Description:	1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.17387.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.17387.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.17387.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.17387.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.17387.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.17387.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.17387.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.17387.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.17387.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.17387.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.17387.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	3.44	3.44	4.19	1.22
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	6.03	6.06	0.47	0.08
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	17.98	15.32	7.97	0.44
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	8.19	9.72	4.38	0.54
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	14.18	13.72	2.87	0.20
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	15.67	14.46	2.46	0.16
	Gene expression data from Aft red fruit peel	exocarp	3	3	27.47	24.16	9.61	0.35
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	8.65	10.92	5.11	0.59
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	9.69	7.33	10.52	1.09
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	66.15	58.16	34.21	0.52
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	4.97	4.97	1.42	0.28
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	9.36	7.25	4.90	0.52
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	7.67	7.67	2.93	0.38
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	32.00	35.39	14.15	0.44
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	11.35	11.35	1.81	0.16
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	2.80	2.80	2.56	0.91
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	2.45	1.84	2.02	0.82
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	6.17	6.17	2.92	0.47
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	13.04	12.88	1.64	0.13
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	4.76	5.91	3.25	0.68
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	1.71	1.92	1.62	0.94
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	0.60	0.60	0.14	0.23
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	6.66	6.66	3.25	0.49
	Gene expression data from Micro-Tom root	root	3	3	7.94	7.70	2.23	0.28

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	6.39773	0.213	A
	GSM480171 extract 1	0.478812	0.932	A
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	6.05916	0.432	A
	GSM480213 extract 1	6.47642	0.534	A
	GSM480214 extract 1	5.54613	0.432	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	15.3213	0.019	P
	GSM480182 extract 1	11.6826	0.046	P
	GSM480181 extract 1	26.9468	0.014	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	3.24463	0.334	A
	GSM480187 extract 1	9.7233	0.246	A
	GSM480189 extract 1	11.5968	0.038	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	14.1589	0.171	A
	GSM480224 extract 1	11.2106	0.304	A
	GSM480226 extract 1	13.2898	0.019	P
	GSM480227 extract 1	18.0613	0.004	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	14.0458	0.002	P
	GSM480207 extract 1	14.4607	0.008	P
	GSM480206 extract 1	18.494	0.001	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	19.9504	0.011	P
	GSM480211 extract 1	38.3019	7e-4	P
	GSM480210 extract 1	24.1605	0.001	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	2.78919	0.568	A
	GSM480220 extract 1	12.2259	0.004	P
	GSM480218 extract 1	10.9241	0.068	A
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	21.1833	0.056	M
	GSM480222 extract 1	7.33034	0.568	A
	GSM480223 extract 1	0.552406	0.726	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	58.1597	2e-4	P
	GSM480190 extract 1	36.6441	7e-4	P
	GSM480191 extract 1	103.649	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	5.97114	0.219	A
	GSM480195 extract 1	3.9696	0.466	A
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	7.25434	0.150	A
	GSM480197 extract 1	14.9648	0.046	P
	GSM480198 extract 1	5.87379	0.358	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	5.59758	0.432	A
	GSM480193 extract 1	9.73631	0.112	A
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	13.24	0.030	P
	GSM480230 extract 1	41.8153	0.011	P
	GSM480228 extract 1	28.9581	0.002	P
	GSM480231 extract 1	43.9681	0.002	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	12.6323	0.056	M
	GSM480169 extract 1	10.0684	0.056	M
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	0.990376	0.696	A
	GSM480173 extract 1	4.61323	0.534	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	4.70156	0.304	A
	GSM480174 extract 1	0.80324	0.850	A
	GSM480176 extract 1	1.84374	0.666	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	3.24623	0.601	A
	GSM480178 extract 1	9.08659	0.304	A
	GSM480177 extract 1	6.16728	0.095	A
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	14.7591	0.046	P
	GSM480201 extract 1	11.4826	0.068	A
	GSM480202 extract 1	12.8817	0.008	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	7.27241	0.568	A
	GSM480205 extract 1	5.90987	0.219	A
	GSM480203 extract 1	1.08671	0.726	A
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	3.20944	0.534	A
	GSM480215 extract 1	1.9201	0.534	A
	GSM480216 extract 1		0e+0	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	0.698363	0.568	A
	GSM480185 extract 1	0.501327	0.888	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	8.95192	0.030	P
	GSM480184 extract 1	4.36274	0.195	A
Gene expression data from Micro-Tom root	GSM480165 extract 1	5.8486	0.171	A
	GSM480166 extract 1	10.2811	0.334	A
	GSM480167 extract 1	7.7007	0.195	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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