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Expression Template: LesAffx.24384.1.S1_at

Template Basic Information

Template name:	LesAffx.24384.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U572569
External db links:	GenBank: BM535554

Annotations for unigene SGN-U572569 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|217074134\|gb\|ACJ85427.1\|	274	1e-71	53.76	786 bp (66.7%)	2
Description:	unknown [Medicago truncatula]
arabidopsis	blastx	At1G69330.1	256	1e-68	52.38	792 bp (67.2%)	2
Description:	zinc finger (C3HC4-type RING finger) family protein \| chr1:26067801-26068613 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.24384.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.24384.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.24384.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.24384.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.24384.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.24384.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.24384.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.24384.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.24384.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.24384.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.24384.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	105.38	105.38	12.84	0.12
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1449.34	1382.73	149.46	0.10
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	135.21	130.04	22.15	0.16
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1005.35	1005.38	7.22	0.01
	Gene expression data from Aft red fruit peel	exocarp	3	3	588.65	581.28	15.82	0.03
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	710.76	719.68	23.30	0.03
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	517.12	516.12	19.61	0.04
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	141.01	134.41	22.34	0.16
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	152.10	152.10	62.11	0.41
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	111.87	111.46	9.74	0.09
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	98.10	98.10	3.98	0.04
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	351.28	236.30	230.89	0.66
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	140.52	140.52	0.45	0.00
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	53.18	53.18	9.68	0.18
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	74.19	68.02	28.06	0.38
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	60.19	58.94	11.58	0.19
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	915.97	874.44	94.43	0.10
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	707.91	719.90	28.55	0.04
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	530.96	759.46	461.31	0.87
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	304.10	303.01	23.37	0.08
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	296.97	296.97	7.73	0.03
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	273.99	273.99	84.12	0.31
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	468.13	313.80	366.85	0.78
	Gene expression data from Micro-Tom root	root	3	3	103.38	108.24	11.38	0.11

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	96.2953	7e-4	P
	GSM480170 extract 1	114.455	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	1344.77	2e-4	P
	GSM480202 extract 1	1382.73	2e-4	P
	GSM480200 extract 1	1620.52	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	116.106	2e-4	P
	GSM480188 extract 1	159.487	7e-4	P
	GSM480187 extract 1	130.035	7e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	1012.55	2e-4	P
	GSM480208 extract 1	998.112	2e-4	P
	GSM480207 extract 1	1005.38	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	581.275	2e-4	P
	GSM480209 extract 1	577.857	2e-4	P
	GSM480211 extract 1	606.815	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	728.294	2e-4	P
	GSM480219 extract 1	719.678	2e-4	P
	GSM480220 extract 1	684.323	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	516.122	2e-4	P
	GSM480223 extract 1	537.207	2e-4	P
	GSM480221 extract 1	498.02	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	122.718	2e-4	P
	GSM480190 extract 1	134.414	2e-4	P
	GSM480191 extract 1	165.908	7e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	108.185	2e-4	P
	GSM480195 extract 1	196.025	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	111.457	2e-4	P
	GSM480198 extract 1	121.815	2e-4	P
	GSM480199 extract 1	102.342	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	100.914	2e-4	P
	GSM480194 extract 1	95.2837	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	697.608	2e-4	P
	GSM480229 extract 1	237.192	2e-4	P
	GSM480230 extract 1	235.403	2e-4	P
	GSM480228 extract 1	234.925	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	140.203	7e-4	P
	GSM480169 extract 1	140.846	7e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	60.0232	7e-4	P
	GSM480173 extract 1	46.3354	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	49.7377	7e-4	P
	GSM480176 extract 1	104.825	2e-4	P
	GSM480174 extract 1	68.0221	0.001	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	72.3415	2e-4	P
	GSM480179 extract 1	49.2761	0.002	P
	GSM480178 extract 1	58.9376	7e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	1024.04	2e-4	P
	GSM480205 extract 1	874.441	2e-4	P
	GSM480203 extract 1	849.418	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	675.321	2e-4	P
	GSM480213 extract 1	728.516	2e-4	P
	GSM480212 extract 1	719.898	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	759.461	2e-4	P
	GSM480215 extract 1	833.411	2e-4	P
	GSM480216 extract 1		0e+0	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	328.004	2e-4	P
	GSM480180 extract 1	303.011	7e-4	P
	GSM480182 extract 1	281.297	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	291.509	2e-4	P
	GSM480186 extract 1	302.435	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	214.507	7e-4	P
	GSM480184 extract 1	333.466	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	277.221	2e-4	P
	GSM480227 extract 1	1013.47	2e-4	P
	GSM480225 extract 1	231.439	7e-4	P
	GSM480224 extract 1	350.374	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	108.245	2e-4	P
	GSM480165 extract 1	90.3794	0.002	P
	GSM480166 extract 1	111.522	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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