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Expression Template: LesAffx.13113.1.S1_at

Template Basic Information

Template name:	LesAffx.13113.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U603486
External db links:	GenBank: BF096415

Annotations for unigene SGN-U603486 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|28932880\|gb\|AAO60108.1\|	145	8e-34	58.93	336 bp (92.6%)	1
Description:	nodulin-like protein [Gossypium hirsutum]
arabidopsis	blastx	At1G09380.1	145	8e-36	57.14	336 bp (92.6%)	1
Description:	integral membrane family protein / nodulin MtN21-related \| chr1:3026353-3029324 REVERSE
swissprot	blastx	Q6J163	90.1	3e-18	42.86	315 bp (86.8%)	1
Description:	Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.13113.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.13113.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.13113.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.13113.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.13113.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.13113.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.13113.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.13113.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.13113.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.13113.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.13113.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	16.94	16.94	1.47	0.09
	Gene expression data from Aft red fruit flesh	endocarp	3	3	6.58	7.29	2.31	0.35
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	2.70	4.04	2.34	0.87
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	5.28	4.48	2.66	0.50
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	2.69	2.69	2.95	1.10
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	11.78	12.81	5.33	0.45
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	7.25	5.54	3.89	0.54
	Gene expression data from Aft red fruit peel	exocarp	3	3	4.01	2.81	3.12	0.78
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	5.33	4.77	1.02	0.19
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	7.22	8.54	2.74	0.38
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	5.54	5.69	1.63	0.29
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	8.30	8.30	0.41	0.05
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	5.02	6.58	3.81	0.76
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	3.18	3.18	3.55	1.12
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	7.91	7.61	3.31	0.42
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	202.29	202.29	103.68	0.51
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	7.85	7.85	1.69	0.22
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	15.85	11.51	7.93	0.50
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	13.87	13.35	1.19	0.09
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	9.82	9.70	1.68	0.17
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	9.12	10.20	2.24	0.25
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	6.48	8.98	5.05	0.78
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	5.36	5.36	0.93	0.17
	Gene expression data from Micro-Tom root	root	3	3	420.48	418.80	48.08	0.11

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	15.8996	2e-4	P
	GSM480171 extract 1	17.9767	0.001	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	8.45279	0.024	P
	GSM480203 extract 1	7.29238	0.004	P
	GSM480204 extract 1	4.00837	0.081	A
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	4.05799	0.399	A
	GSM480216 extract 1		0e+0	P
	GSM480217 extract 1	4.04324	0.500	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	4.4806	0.334	A
	GSM480181 extract 1	3.10488	0.466	A
	GSM480182 extract 1	8.25152	0.213	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	4.77755	0.195	A
	GSM480186 extract 1	0.599282	0.601	A
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	10.1901	0.008	P
	GSM480224 extract 1	15.4202	0.002	P
	GSM480227 extract 1	4.96187	0.304	A
	GSM480225 extract 1	16.5586	0.014	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	5.53658	0.011	P
	GSM480207 extract 1	4.51675	0.095	A
	GSM480208 extract 1	11.7008	0.002	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	2.80651	0.195	A
	GSM480210 extract 1	7.56155	0.003	P
	GSM480211 extract 1	1.67415	0.219	A
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	4.70552	0.304	A
	GSM480219 extract 1	6.50593	0.107	A
	GSM480220 extract 1	4.76844	0.246	A
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	8.54347	0.046	P
	GSM480223 extract 1	4.07122	0.150	A
	GSM480221 extract 1	9.04835	0.150	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	5.69263	0.150	A
	GSM480191 extract 1	7.09669	0.011	P
	GSM480192 extract 1	3.84245	0.219	A
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	8.5937	0.024	P
	GSM480196 extract 1	8.01279	0.011	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	7.79308	0.004	P
	GSM480198 extract 1	0.671327	0.829	A
	GSM480199 extract 1	6.58317	0.366	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	0.671184	0.432	A
	GSM480194 extract 1	5.69256	0.056	M
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	11.8108	0.068	A
	GSM480228 extract 1	9.43971	0.038	P
	GSM480231 extract 1	4.60798	0.171	A
	GSM480229 extract 1	5.78714	0.334	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	128.975	2e-4	P
	GSM480169 extract 1	275.605	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	9.05019	0.008	P
	GSM480173 extract 1	6.65678	0.112	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	11.0473	0.054	M
	GSM480175 extract 1	25.0051	2e-4	P
	GSM480174 extract 1	11.5097	0.081	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	15.2316	0.003	P
	GSM480177 extract 1	13.0195	7e-4	P
	GSM480178 extract 1	13.3479	0.006	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	9.70398	0.056	M
	GSM480202 extract 1	8.19501	0.056	M
	GSM480200 extract 1	11.5535	0.081	A
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	10.195	0.011	P
	GSM480214 extract 1	10.6101	0.056	M
	GSM480212 extract 1	6.54785	0.334	A
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	8.97993	0.095	A
	GSM480187 extract 1	9.7899	0.081	A
	GSM480188 extract 1	0.669277	0.666	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	6.01981	0.046	P
	GSM480183 extract 1	4.69862	0.130	A
Gene expression data from Micro-Tom root	GSM480166 extract 1	418.804	2e-4	P
	GSM480167 extract 1	373.254	2e-4	P
	GSM480165 extract 1	469.375	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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