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Expression Template: LesAffx.56820.1.S1_at

Template Basic Information

Template name:	LesAffx.56820.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U583478
External db links:	GenBank: AW031728

Annotations for unigene SGN-U583478 (manual: 0 | blast: 3 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157344906\|emb\|CAO71634.1\|	565	7e-159	68.07	1212 bp (63.6%)	2
Description:	unnamed
arabidopsis	blastx	At2G03200.1	533	1e-151	60.86	1260 bp (66.1%)	2
Description:	aspartyl protease family protein \| chr2:966503-967888 REVERSE
swissprot	blastx	Q766C3	441	9e-123	51.9	1239 bp (65.0%)	2
Description:	Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1

GO Terms Annotations

GO:0006508proteolysis and peptidolysis
GO:0004194pepsin A activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.56820.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.56820.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.56820.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.56820.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.56820.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.56820.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.56820.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.56820.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.56820.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.56820.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.56820.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	52.23	52.23	22.82	0.44
	Gene expression data from Aft red fruit flesh	endocarp	3	3	1.57	0.57	1.80	1.15
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	4.36	2.39	4.40	1.01
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	4.70	4.70	0.38	0.08
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	8.29	8.29	6.42	0.77
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	2.08	1.64	1.60	0.77
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	3.73	3.28	1.58	0.42
	Gene expression data from Aft red fruit peel	exocarp	3	3	16.44	14.81	3.24	0.20
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	4.64	5.35	1.81	0.39
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	6.10	5.21	3.95	0.65
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	4.08	3.67	3.45	0.85
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	4.90	4.90	2.61	0.53
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	4.15	5.98	3.20	0.77
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	5.04	5.04	4.77	0.95
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	2.73	2.22	2.41	0.88
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	198.57	198.57	35.68	0.18
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	25.46	25.46	0.28	0.01
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	67.17	72.25	14.11	0.21
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	94.50	91.63	5.34	0.06
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	8.39	5.85	5.39	0.64
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	2.76	2.15	2.49	0.90
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	4.06	5.87	3.52	0.87
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	3.26	1.83	2.97	0.91
	Gene expression data from Micro-Tom root	root	3	3	341.16	347.98	29.34	0.09

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	36.095	7e-4	P
	GSM480171 extract 1	68.3611	7e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	0.570565	0.696	A
	GSM480204 extract 1	3.646	0.239	A
	GSM480205 extract 1	0.485506	0.829	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	1.29525	0.666	A
	GSM480181 extract 1	9.40432	0.046	P
	GSM480182 extract 1	2.3942	0.601	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	4.96935	0.195	A
	GSM480186 extract 1	4.43722	0.112	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	12.8296	0.038	P
	GSM480184 extract 1	3.75161	0.246	A
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	2.15825	0.666	A
	GSM480225 extract 1	1.1296	0.534	A
	GSM480227 extract 1	0.739442	0.366	A
	GSM480226 extract 1	4.31018	0.366	A
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	2.42914	0.399	A
	GSM480206 extract 1	5.48589	0.017	P
	GSM480207 extract 1	3.27906	0.466	A
Gene expression data from Aft red fruit peel	GSM480210 extract 1	20.1642	2e-4	P
	GSM480211 extract 1	14.8076	0.006	P
	GSM480209 extract 1	14.3377	0.008	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	5.3479	0.150	A
	GSM480219 extract 1	2.57654	0.568	A
	GSM480218 extract 1	5.98914	0.432	A
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	10.4214	0.171	A
	GSM480221 extract 1	2.67127	0.534	A
	GSM480222 extract 1	5.20852	0.195	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	3.66573	0.246	A
	GSM480192 extract 1	0.853924	0.534	A
	GSM480190 extract 1	7.71947	0.195	A
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	3.05087	0.466	A
	GSM480196 extract 1	6.74514	0.130	A
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	5.97808	0.130	A
	GSM480197 extract 1	6.02992	0.194	A
	GSM480198 extract 1	0.453811	0.850	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	8.41482	0.246	A
	GSM480194 extract 1	1.67245	0.334	A
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	6.0872	0.068	A
	GSM480229 extract 1	1.85901	0.304	A
	GSM480231 extract 1	2.5892	0.366	A
	GSM480230 extract 1	0.403201	0.888	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	173.336	2e-4	P
	GSM480169 extract 1	223.801	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	25.2602	0.002	P
	GSM480173 extract 1	25.6525	0.002	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	72.2532	7e-4	P
	GSM480175 extract 1	51.2276	2e-4	P
	GSM480176 extract 1	78.0414	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	91.2031	7e-4	P
	GSM480179 extract 1	100.656	2e-4	P
	GSM480177 extract 1	91.633	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	5.85141	0.195	A
	GSM480201 extract 1	14.5873	0.004	P
	GSM480202 extract 1	4.73698	0.130	A
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	0.622697	0.696	A
	GSM480214 extract 1	5.50113	0.002	P
	GSM480213 extract 1	2.15447	0.304	A
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1		0e+0	P
	GSM480215 extract 1	6.30001	0.195	A
	GSM480217 extract 1	5.86844	0.274	A
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	1.26719	0.534	A
	GSM480188 extract 1	1.82958	0.534	A
	GSM480189 extract 1	6.67027	0.171	A
Gene expression data from Micro-Tom root	GSM480166 extract 1	347.978	7e-4	P
	GSM480167 extract 1	309.005	2e-4	P
	GSM480165 extract 1	366.487	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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