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Expression Template: LesAffx.70248.1.S1_at

Template Basic Information

Template name:	LesAffx.70248.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U570252
External db links:	GenBank: AW033414

Annotations for unigene SGN-U570252 (manual: 0 | blast: 3 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157360873\|emb\|CAO70690.1\|	298	5e-79	77.07	612 bp (67.2%)	2
Description:	unnamed
arabidopsis	blastx	At3G58180.1	288	4e-78	75.13	588 bp (64.5%)	2
Description:	PBS lyase HEAT-like repeat-containing protein \| chr3:21555166-21556958 FORWARD
swissprot	blastx	Q94JW0	288	4e-77	75.13	588 bp (64.5%)	2
Description:	Deoxyhypusine hydroxylase OS=Arabidopsis thaliana GN=At3g58180 PE=2 SV=1

GO Terms Annotations

GO:0005488binding

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.70248.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.70248.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.70248.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.70248.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.70248.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.70248.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.70248.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.70248.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.70248.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.70248.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.70248.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	247.18	247.18	3.54	0.01
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	158.49	150.00	19.54	0.12
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	139.67	140.63	6.24	0.04
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	59.30	31.23	63.40	1.07
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	172.27	172.54	2.77	0.02
	Gene expression data from Aft red fruit peel	exocarp	3	3	142.95	143.04	0.54	0.00
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	158.10	156.31	33.57	0.21
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	133.02	142.06	19.18	0.14
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	154.70	161.81	14.59	0.09
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	229.46	229.46	8.75	0.04
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	201.66	217.30	28.12	0.14
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	155.08	155.08	9.80	0.06
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	61.34	45.24	39.89	0.65
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	295.12	295.12	55.01	0.19
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	123.31	123.31	5.51	0.04
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	116.05	104.68	22.16	0.19
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	124.85	126.43	13.73	0.11
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	180.02	178.33	16.27	0.09
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	129.16	125.22	7.68	0.06
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	156.95	154.04	9.84	0.06
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	115.42	167.97	100.09	0.87
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	195.96	195.96	6.78	0.03
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	163.88	163.88	10.52	0.06
	Gene expression data from Micro-Tom root	root	3	3	279.01	268.29	51.61	0.18

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	244.67	2e-4	P
	GSM480171 extract 1	249.683	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	180.833	2e-4	P
	GSM480181 extract 1	149.997	2e-4	P
	GSM480182 extract 1	144.629	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	145.37	2e-4	P
	GSM480187 extract 1	133.005	2e-4	P
	GSM480188 extract 1	140.628	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	20.6574	0.006	P
	GSM480227 extract 1	154.084	2e-4	P
	GSM480224 extract 1	32.9424	2e-4	P
	GSM480225 extract 1	29.5095	0.014	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	172.542	2e-4	P
	GSM480208 extract 1	169.367	2e-4	P
	GSM480207 extract 1	174.896	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	142.366	2e-4	P
	GSM480210 extract 1	143.432	2e-4	P
	GSM480211 extract 1	143.045	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	192.535	2e-4	P
	GSM480220 extract 1	125.471	2e-4	P
	GSM480218 extract 1	156.307	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	146.014	2e-4	P
	GSM480221 extract 1	110.994	2e-4	P
	GSM480223 extract 1	142.059	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	161.813	2e-4	P
	GSM480192 extract 1	137.918	2e-4	P
	GSM480190 extract 1	164.369	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	223.276	2e-4	P
	GSM480196 extract 1	235.654	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	217.303	2e-4	P
	GSM480198 extract 1	169.193	2e-4	P
	GSM480199 extract 1	218.479	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	148.156	2e-4	P
	GSM480194 extract 1	162.014	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	44.5115	0.002	P
	GSM480228 extract 1	34.2225	2e-4	P
	GSM480230 extract 1	45.9746	0.002	P
	GSM480231 extract 1	120.653	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	256.218	2e-4	P
	GSM480169 extract 1	334.014	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	119.413	2e-4	P
	GSM480173 extract 1	127.202	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	101.878	2e-4	P
	GSM480176 extract 1	141.588	2e-4	P
	GSM480174 extract 1	104.682	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	126.434	2e-4	P
	GSM480178 extract 1	137.717	2e-4	P
	GSM480179 extract 1	110.401	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	164.666	2e-4	P
	GSM480201 extract 1	197.077	2e-4	P
	GSM480202 extract 1	178.332	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	125.218	2e-4	P
	GSM480204 extract 1	138.016	2e-4	P
	GSM480203 extract 1	124.255	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	167.91	2e-4	P
	GSM480212 extract 1	148.896	2e-4	P
	GSM480214 extract 1	154.038	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1		0e+0	P
	GSM480217 extract 1	167.967	2e-4	P
	GSM480215 extract 1	178.286	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	200.751	2e-4	P
	GSM480186 extract 1	191.161	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	171.321	2e-4	P
	GSM480183 extract 1	156.448	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	268.286	2e-4	P
	GSM480166 extract 1	233.604	2e-4	P
	GSM480167 extract 1	335.143	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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