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Expression Template: LesAffx.66600.1.A1_at

Template Basic Information

Template name:	LesAffx.66600.1.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U573017 SGN-U573017
External db links:	GenBank: AW036163

Annotations for unigene SGN-U573017 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15232959\|ref\|NP_186922.1\|	186	3e-45	58.89	519 bp (62.6%)	2
Description:	TRXF1 (THIOREDOXIN F-TYPE 1); enzyme activator [Arabidopsis thaliana] >gi27735269\|sp\|Q9XFH8.2\|T&hellip
arabidopsis	blastx	At3G02730.1	186	2e-47	58.89	519 bp (62.6%)	2
Description:	Symbols: TRXF1, ATF1 \| ATF1/TRXF1 (THIOREDOXIN F-TYPE 1); thiol-disulfide exchange intermediat&hellip
swissprot	blastx	Q9XFH8	186	2e-46	58.89	519 bp (62.6%)	2
Description:	Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2

GO Terms Annotations

No Gene Ontology annotation

Annotations for unigene SGN-U573017 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15232959\|ref\|NP_186922.1\|	186	3e-45	58.89	519 bp (62.6%)	2
Description:	TRXF1 (THIOREDOXIN F-TYPE 1); enzyme activator [Arabidopsis thaliana] >gi27735269\|sp\|Q9XFH8.2\|T&hellip
arabidopsis	blastx	At3G02730.1	186	2e-47	58.89	519 bp (62.6%)	2
Description:	Symbols: TRXF1, ATF1 \| ATF1/TRXF1 (THIOREDOXIN F-TYPE 1); thiol-disulfide exchange intermediat&hellip
swissprot	blastx	Q9XFH8	186	2e-46	58.89	519 bp (62.6%)	2
Description:	Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.66600.1.A1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.66600.1.A1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.66600.1.A1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.66600.1.A1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.66600.1.A1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.66600.1.A1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.66600.1.A1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.66600.1.A1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.66600.1.A1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.66600.1.A1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.66600.1.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	170.31	170.31	20.43	0.12
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	49.03	38.48	20.37	0.42
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	140.45	137.98	40.57	0.29
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	26.14	36.81	22.76	0.87
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	19.47	18.86	3.57	0.18
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	15.56	17.26	4.16	0.27
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	24.00	24.00	1.13	0.05
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	37.21	35.23	6.92	0.19
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	58.68	53.57	19.13	0.33
	Gene expression data from Aft red fruit peel	exocarp	3	3	20.52	19.96	1.74	0.08
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	80.90	84.22	23.00	0.28
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	49.64	47.08	6.50	0.13
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	16.81	19.53	7.57	0.45
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	11.72	11.72	12.35	1.05
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	8.89	11.40	5.89	0.66
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	9.82	9.82	11.85	1.21
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	31.61	26.88	10.68	0.34
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	54.40	54.40	0.66	0.01
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	184.49	184.49	22.80	0.12
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	48.55	44.37	13.61	0.28
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	179.12	173.55	36.89	0.21
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	25.31	25.96	2.30	0.09
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	15.62	15.62	0.28	0.02
	Gene expression data from Micro-Tom root	root	3	3	18.07	17.09	5.60	0.31

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	155.857	2e-4	P
	GSM480170 extract 1	184.754	7e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	38.4837	0.001	P
	GSM480202 extract 1	72.5123	0.008	P
	GSM480200 extract 1	36.0916	0.011	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	137.978	2e-4	P
	GSM480212 extract 1	182.2	7e-4	P
	GSM480213 extract 1	101.181	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	36.8119	7e-4	P
	GSM480215 extract 1	41.5983	0.008	P
	GSM480216 extract 1		0e+0	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	18.8617	0.019	P
	GSM480180 extract 1	16.2404	0.004	P
	GSM480181 extract 1	23.2943	0.081	A
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	17.2559	0.304	A
	GSM480188 extract 1	10.8172	0.150	A
	GSM480189 extract 1	18.5939	0.038	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	23.2019	0.046	P
	GSM480184 extract 1	24.7947	0.056	M
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	47.01	0.024	P
	GSM480224 extract 1	31.3851	0.056	M
	GSM480226 extract 1	36.9627	0.081	A
	GSM480227 extract 1	33.4976	0.038	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	42.6303	0.002	P
	GSM480208 extract 1	53.5703	0.001	P
	GSM480207 extract 1	79.8504	7e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	19.957	0.019	P
	GSM480209 extract 1	22.4673	0.046	P
	GSM480211 extract 1	19.1299	0.056	M
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	56.4158	2e-4	P
	GSM480220 extract 1	102.058	0.002	P
	GSM480218 extract 1	84.2226	7e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	47.0818	0.030	P
	GSM480223 extract 1	57.0243	0.019	P
	GSM480222 extract 1	44.801	0.008	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	22.6306	0.006	P
	GSM480191 extract 1	8.25239	0.024	P
	GSM480192 extract 1	19.5348	0.014	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	2.98974	0.366	A
	GSM480196 extract 1	20.4503	0.130	A
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	2.15983	0.334	A
	GSM480199 extract 1	11.3983	0.171	A
	GSM480197 extract 1	13.1208	0.081	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1.44477	0.432	A
	GSM480194 extract 1	18.2039	0.081	A
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	25.3626	0.024	P
	GSM480230 extract 1	28.3912	0.019	P
	GSM480228 extract 1	47.4843	0.054	M
	GSM480231 extract 1	25.2085	0.046	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	53.9292	0.001	P
	GSM480169 extract 1	54.8629	0.001	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	168.373	2e-4	P
	GSM480173 extract 1	200.616	0.001	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	63.7575	0.006	P
	GSM480175 extract 1	37.524	0.014	P
	GSM480174 extract 1	44.3705	0.019	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	173.55	7e-4	P
	GSM480179 extract 1	145.333	2e-4	P
	GSM480178 extract 1	218.484	0.001	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	22.7626	0.030	P
	GSM480205 extract 1	27.2194	0.095	A
	GSM480204 extract 1	25.9569	0.046	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	15.8124	0.130	A
	GSM480185 extract 1	15.4227	0.081	A
Gene expression data from Micro-Tom root	GSM480165 extract 1	17.0928	0.056	M
	GSM480166 extract 1	24.0919	0.008	P
	GSM480167 extract 1	13.0193	0.008	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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