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Expression Template: LesAffx.51476.1.A1_at

Template Basic Information

Template name:	LesAffx.51476.1.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U564231
External db links:	GenBank: CD003505

Annotations for unigene SGN-U564231 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147842426\|emb\|CAN69516.1\|	471	8e-131	90.34	714 bp (56.1%)	2
Description:	hypothetical protein [Vitis vinifera]
arabidopsis	blastx	At5G39360.1	433	1e-121	82.43	714 bp (56.1%)	2
Description:	circadian clock coupling factor-related \| chr5:15770541-15771290 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.51476.1.A1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.51476.1.A1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.51476.1.A1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.51476.1.A1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.51476.1.A1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.51476.1.A1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.51476.1.A1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.51476.1.A1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.51476.1.A1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.51476.1.A1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.51476.1.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	12.69	12.69	3.75	0.30
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	9.25	8.09	2.53	0.27
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	5.46	6.72	4.96	0.91
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	15.73	15.09	1.61	0.10
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	3.53	2.47	3.07	0.87
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	6.53	6.43	3.16	0.48
	Gene expression data from Aft red fruit peel	exocarp	3	3	5.92	6.05	0.38	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	8.50	6.97	3.17	0.37
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	12.49	8.61	7.61	0.61
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	5.49	5.02	4.68	0.85
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	6.78	6.78	3.27	0.48
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	10.63	9.89	3.12	0.29
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	2.80	2.80	2.24	0.80
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	7.08	6.81	5.72	0.81
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	7.01	7.01	2.18	0.31
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	6.53	6.53	2.11	0.32
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	11.74	10.80	2.07	0.18
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	4.07	3.87	2.28	0.56
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	3.82	4.25	1.55	0.41
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	7.62	8.14	1.32	0.17
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	3.80	3.80	2.45	0.65
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	2.46	1.07	2.71	1.10
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	4.98	4.98	2.50	0.50
	Gene expression data from Micro-Tom root	root	3	3	5.09	4.81	0.75	0.15

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	10.038	0.130	A
	GSM480170 extract 1	15.3384	0.008	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	8.08816	0.112	A
	GSM480202 extract 1	7.5046	0.081	A
	GSM480200 extract 1	12.1501	0.171	A
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1		0e+0	P
	GSM480217 extract 1	6.71745	0.366	A
	GSM480215 extract 1	9.67645	0.130	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	14.536	0.130	A
	GSM480181 extract 1	17.5634	0.246	A
	GSM480182 extract 1	15.0867	0.030	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	2.13697	0.466	A
	GSM480227 extract 1	8.0283	0.334	A
	GSM480225 extract 1	2.79589	0.666	A
	GSM480224 extract 1	1.17528	0.666	A
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	6.43052	0.195	A
	GSM480208 extract 1	3.42243	0.274	A
	GSM480207 extract 1	9.74212	0.038	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	6.21934	0.112	A
	GSM480209 extract 1	5.49703	0.171	A
	GSM480211 extract 1	6.04606	0.077	A
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	12.148	0.003	P
	GSM480219 extract 1	6.38141	0.014	P
	GSM480220 extract 1	6.96709	0.112	A
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	7.59779	0.150	A
	GSM480221 extract 1	21.253	0.003	P
	GSM480223 extract 1	8.61441	0.366	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	10.3878	0.003	P
	GSM480192 extract 1	5.01978	0.304	A
	GSM480190 extract 1	1.05567	0.696	A
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	4.46984	0.534	A
	GSM480195 extract 1	9.09425	0.219	A
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	9.88634	0.024	P
	GSM480198 extract 1	7.94944	0.130	A
	GSM480199 extract 1	14.0482	0.038	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	4.38945	0.399	A
	GSM480194 extract 1	1.22055	0.534	A
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	10.2265	0.150	A
	GSM480231 extract 1	3.39721	0.568	A
	GSM480229 extract 1	1.2409	0.666	A
	GSM480228 extract 1	13.4565	0.112	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	8.55297	0.081	A
	GSM480169 extract 1	5.47402	0.068	A
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	5.03366	0.046	P
	GSM480173 extract 1	8.01642	0.171	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	10.8001	0.112	A
	GSM480175 extract 1	10.3033	0.246	A
	GSM480174 extract 1	14.1079	0.150	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	3.87088	0.432	A
	GSM480179 extract 1	6.43513	0.334	A
	GSM480178 extract 1	1.89128	0.696	A
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	5.11555	0.534	A
	GSM480204 extract 1	2.10314	0.534	A
	GSM480203 extract 1	4.25262	0.466	A
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	6.11619	0.112	A
	GSM480212 extract 1	8.1387	0.130	A
	GSM480213 extract 1	8.60896	0.068	A
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	2.06077	0.601	A
	GSM480186 extract 1	5.53199	0.246	A
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	5.59051	0.246	A
	GSM480187 extract 1	0.733894	0.829	A
	GSM480188 extract 1	1.06757	0.500	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	6.75238	0.399	A
	GSM480184 extract 1	3.2128	0.466	A
Gene expression data from Micro-Tom root	GSM480167 extract 1	4.52129	0.274	A
	GSM480165 extract 1	4.80992	0.267	A
	GSM480166 extract 1	5.94184	0.195	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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