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Expression Template: LesAffx.67047.1.S1_at

Template Basic Information

Template name:	LesAffx.67047.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U580809
External db links:	GenBank: BG134086

Annotations for unigene SGN-U580809 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|18409234\|ref\|NP_566942.1\|	210	2e-52	66.08	495 bp (49.7%)	1
Description:	unknown protein [Arabidopsis thaliana] >gi6562253\|emb\|CAB62623.1\| hypothetical protein [Arabido&hellip
arabidopsis	blastx	At3G51010.1	210	1e-54	66.08	495 bp (49.7%)	1
Description:	similar to Os05g0126200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054525.1) \| chr3:18&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.67047.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.67047.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.67047.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.67047.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.67047.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.67047.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.67047.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.67047.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.67047.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.67047.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.67047.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	78.28	78.28	43.28	0.55
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	102.64	102.62	15.93	0.16
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	88.18	88.18	0.58	0.01
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	91.48	74.57	40.31	0.44
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	42.15	42.93	5.47	0.13
	Gene expression data from Aft red fruit peel	exocarp	3	3	102.76	104.59	15.17	0.15
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	54.97	52.92	3.93	0.07
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	96.42	89.16	17.84	0.19
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	76.14	90.22	30.16	0.40
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	93.57	93.57	33.26	0.36
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	82.68	85.03	15.73	0.19
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	79.85	79.85	32.83	0.41
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	77.42	63.65	38.58	0.50
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	92.30	92.30	0.29	0.00
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	92.90	92.90	18.45	0.20
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	76.64	71.55	18.43	0.24
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	58.00	56.22	7.76	0.13
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	56.70	57.31	1.08	0.02
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	128.22	128.07	6.79	0.05
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	63.08	61.45	7.96	0.13
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	57.69	84.25	50.01	0.87
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	65.12	55.15	17.42	0.27
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	111.32	111.32	53.98	0.48
	Gene expression data from Micro-Tom root	root	3	3	100.01	102.00	22.58	0.23

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	47.6716	0.001	P
	GSM480170 extract 1	108.879	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	118.582	2e-4	P
	GSM480187 extract 1	86.7226	2e-4	P
	GSM480188 extract 1	102.623	0.002	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	88.5866	0.001	P
	GSM480184 extract 1	87.769	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	151.137	7e-4	P
	GSM480226 extract 1	80.7721	7e-4	P
	GSM480224 extract 1	68.3683	2e-4	P
	GSM480225 extract 1	65.6453	0.002	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	47.1852	2e-4	P
	GSM480208 extract 1	36.3301	0.003	P
	GSM480207 extract 1	42.9315	0.001	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	86.7673	0.001	P
	GSM480211 extract 1	104.589	0.001	P
	GSM480210 extract 1	116.938	7e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	52.9219	2e-4	P
	GSM480218 extract 1	52.4885	7e-4	P
	GSM480220 extract 1	59.5017	0.002	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	89.1624	0.002	P
	GSM480223 extract 1	116.744	2e-4	P
	GSM480221 extract 1	83.3429	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	41.5162	2e-4	P
	GSM480191 extract 1	96.6868	2e-4	P
	GSM480192 extract 1	90.2241	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	70.0573	7e-4	P
	GSM480196 extract 1	117.088	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	65.9074	0.004	P
	GSM480199 extract 1	85.0345	2e-4	P
	GSM480197 extract 1	97.1019	7e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	56.6393	7e-4	P
	GSM480194 extract 1	103.066	7e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	63.8599	0.006	P
	GSM480229 extract 1	48.1275	0.003	P
	GSM480230 extract 1	63.4392	0.002	P
	GSM480231 extract 1	134.235	7e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	92.5089	2e-4	P
	GSM480168 extract 1	92.0922	0.002	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	105.948	7e-4	P
	GSM480173 extract 1	79.8528	0.002	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	97.0851	7e-4	P
	GSM480175 extract 1	71.5483	0.001	P
	GSM480174 extract 1	61.2923	0.002	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	51.2862	0.003	P
	GSM480177 extract 1	66.4952	0.002	P
	GSM480178 extract 1	56.2169	0.001	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	57.3078	7e-4	P
	GSM480201 extract 1	57.3309	7e-4	P
	GSM480202 extract 1	55.4479	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	128.072	7e-4	P
	GSM480204 extract 1	121.501	7e-4	P
	GSM480203 extract 1	135.083	7e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	61.4459	0.001	P
	GSM480213 extract 1	71.7319	0.003	P
	GSM480214 extract 1	56.059	0.001	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	88.8095	2e-4	P
	GSM480217 extract 1	84.2542	7e-4	P
	GSM480216 extract 1		0e+0	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	54.9766	0.001	P
	GSM480180 extract 1	55.1545	2e-4	P
	GSM480181 extract 1	85.2404	0.002	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	149.489	2e-4	P
	GSM480185 extract 1	73.1522	7e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	101.999	7e-4	P
	GSM480167 extract 1	121.528	2e-4	P
	GSM480166 extract 1	76.5006	0.001	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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