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Tomato locus sitiens
Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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sitiens is a TGRC gene
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch01, position: 3255759
Please cite Razifard et al.
Registry name: | None | [Associate registry name] |
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Success
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Image | Description | Type |
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![]() ![]() | [Associate accession] |
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![]() ![]() | [Associate new locus] |
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Associated loci - graphical view | None |
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![]() ![]() | unprocessed genomic sequence region underlying this gene |
>Solyc01g009230.2 SL2.50ch01:3253891..3262099
ATGGATGAAACACTGAAAAATGGGATCTTGGTTTTTGCTGTGAATGGAAAAAGATACGAGCTTCCTAGTGTTGACCCTTCAACTACTTTGCTTCAGTTTTTGCGCAGTGAAACTTGCTTCAAAAGTCCTAAGTTAGGCTGTGGTGAAGGTAATACTTTTTCCTCTCTCCTTGTGTACATATGTGTAGAGGCGAATTTAGAATTTTAACTCGCTAGGTTCAACTTTTAAGATTCTTAGCATTTGAACTGGTTTGACTTGTGAAACTTATGAGTTCAAAATTTGAATATTTAGTTGGGCTATGTGTAGTTGTTCAATTATATGTTTGTTTTGGTGCAAAGTGCATAGTAAATGCTGAAAGCTTTGGATTTGATATTGGTGTTTTTCTTCTAATGTGTTGGCTCCTTTCGCATCACTTTCTTATTTGTTTTTTTCTTGAAAATTGGGTATCTCTAAATGTGTATAGCTCTTCATTATTAAACTTTACTCCTTTGGTCTAAAGAGTTGCCAAAAAAGGAAAGGGATGTTCTTTTTTAAAAATGGACTAAAAAGGAAAATAGAATAAACAAATTGAAACAGAGGGAGTATTATGTATGGAAATCAAGCAGTGTTATACTTATAGGATTGAAACTATGTGACTTGAGTTGAGGGGAAAGGAAAAGAAAAGAGAGTAGTATTTGTCCTGCTATGTTCTTTTCTTTGTGCTTCTTGGTTTAGTTCTGTACTTTTAAGTTCCTGCTGGTTATGGAGTCCTTCTGTAGCACATGAATTGGTTTCTATTAGTAATTTGGATGTTTTCATTTTATAGGTTACTACGACTTTATGTTTCCTATTCCTTTTTGCATTTCTGATTGTTAAGAAGCTAGGGGAGCTAATGGTATAGTCTTATGCTTATCTTTTGTATCTATCTATAACTTAAAGAATTCTAGTTAATGTGAGGTATGCCATTCTTTTATTCTATTGGCAAGTTTAGACAAGGTTGAAATCATTTTACTTTGAAGAAGTTTTCAGCTCGTCATTTTGAATCTTTAATGTATCTGATGTTAATTGTGCAAAATGAGAATTTAGTTTGAGATAAAGTTACTCATTTTCTAATTTGAATGGTTCAGGTGGTTGTGGTGCTTGTGTTGTTCTTCTCTCAAAGTATGATCCCCAGCTTAAACGGGTTGAAGATTTTAGTGTGAGTTCATGCCTTACGCTTCTTTGCAGTTTAAATGGTTGTGGAATTACTACAAGTGATGGCCTTGGAAACAACAAGGACGGTTTCCACTCAATTCATGAAAGGTTTGCAGGTTTTCATGCTTCTCAATGTGGATATTGCACTCCAGGAATGTGTATGTCCTTTTTTTCGGCTCTTATCAACGCTGATAAAGCAAACAGTACAGATCCTTCAGCAGGATTCTCTAAGTTGACTGCAGCTGAAGCCGAAAAGTCTATAGCAGGGAATCTTTGTCGTTGTACTGGATACCGTCCCATTGCTGATGCCTGCAAGACTTTTGCTGCAGATGTTGATATAGAGGATTTGGGGTTCAATTCTTTTTGGAAAAAGGAAGATTCCAGGGATATGAAAGTGAGCAAGTTACCTCCCTATGATCCAAGTAAGAGCTTGAATTTTAGTACATTTCCTCGATTCTTTAAAAGTGAACCTGCAGCATATTTGGACTCCAGAAAGTATCCATGGGATACTCCTGCTTCTGTTGATGAGCTTCGAAGTTTGTTGCAATCCAATTTGGCTGAAAATGGGGCAAGAATTAAGCTGGTTGTTGGTAACACAGGCACTGGATATTACAAGGAAACACAGAGATATGACCGATACATTGATCTGAGATATATCCCTGAGCTTTCAATCATCAGATTTGATCACATAGGAATTGAAGTAGGGGCTGCTGTTACTATCTCTAAACTTATTTCATTTTTGAAGGAGGAAAACAAAATCAATTTGAGTTCATACGGAAATCTGGTTAGCCAAAAGTTGGCTCAGCACATGGAGAAGATTGCTTCACCATTCGTTAGAAACTCAGCTAGTGTTGGGGGGAATTTGGTTATGGCACAGAAAAACGGTTTCCCTTCCGATATTGCTACGTTATTTCTTGGTCTGGGTGCTACTATCTGTGTATTGACTAGTCAAGGACATGAAAAACTCACATTTGAGGAGTTCTTAGGGAGACCACCACTAGACTCGAGGAGTGTGCTGCTTACTCTTTTGATTCCATTCAAAAAGGAAGGAAGTCCAACCTGTTCTAAGTTTTTGTTTGAAACCTATCGAGCTTCACCACGACCTCTTGGAAATGCACTGCCATATGTAAATGCTGCTTTCCTTGCTGATGTTTCTTCCCACGGGAATGGGATCCTGATAAATGATATCCAGTTGGCTTTTGGTGCTTATGGCACAAGACATCCGACAAGAGCCAAACAAGTAGAAGAACATCTAACCGGGAAGATATTAAGTGTTAATGTATTATCGGAAGCACTTAAATTAGTCAAACAAGTTGTGGTACCTGAAGATGGCACTACACACCCATATTACAGGTCAAGCATGGTAGTCAGTTTTCTTTTCAAGTTTCTTTTTTGCTTCACCAATGTTGATCCCATGAAATATGGTGGTTTATTAAATGGGATCACTTTGGTAGAGGAGGTCTCGGAAAGTAACAAAGACGGTTATATAAGTGAAGGGAAACTACACACACTATTATCTTCTGCTAAGCAGGTTGTGGAGTCAAGCAAAGAGTACCATCCAGTGGGTGAACCAATGAAAAAATTTGGAGCCTCCATGCAAGCTTCTGGTATGTTTTCTCCTTATGTATTTTATTTCACATTATGTATGTAACCAGAGTTTTCTGTCATTTTGAATCCTATTTGTGGCTTTGATGTTGCCGGCTAAATTGGTCAGAGATGAGGCAAACTGATTAAAGGCCTACATGTATTACCCATGTAAAGTTTTCAAGATAAATTGAAATGGAAGTTCTTATGCACCTGACTGAATATTCAGATTTACATGCAATATCTTAATATTCAAAAGTGTATTCAGATTCAGACGTTTTCATATTTGAAAAGAACAACCAGATGTCTTATTGTCTTAGTGTAAAAAACAATTACAATTGCAGGTGAAGCTGTTTATGTAGATGATATTCCATCACCACCAAACTGCCTATATGGAGCATTTATCTATAGTACAAGACCATTAGCAGGGGTAAAGAGCGTCCACTTTGGGTCCAATTCATTACCTGATGGAGTTGCTGCCATTATTACTTTTAAAGATATCCCGAGCGGAGGGGCAAATGTAGGATCCAAGACCATTTTTTCCCCTGAGCCTTTATTTGCAGATGATCTAGCCCGATATGCTGGTGACCGAATTGCTTTTGTGGTAAGCTCTTAGTTTCCAGAATCTTTCAGCTAGAATAGGTTATGCAAGATGATTGCTTGTATACTTACATTTTAAACTTTTTCTTTTATGTTCAATGTTGTGTCAAATAACTCAGGTTGCTGAAAGTCAGAGGTCTGCAGATGTGGCTGCAAGCATGGCCATTGTTGAATATGACACCGAAAATATAGATTCTCCGATTTTAACCGTTGAGGAAGCCGTTCAGAAATCCAGTTTTTTCCAAGTCCCACCATTATTTTATCCAAAACAAGTTGGTGATTTCTCAAAAGGAATGACTGAAGCTGACCACAAGATTCTCTCTGCTGAGGTACTTTTGATTTGTTCTTGAAAGGAGGTGTGACCATCTCATCTAAAAGTTTAAGGGATTAGGAAGAGCGGATTTTATTTACTGAATTATGTCTTTTAATAGTTTCAAATTTATCTGTGATTGGTCCTGCATATAAATCTTTTGCAGACGAGACTTGGGTCTCAGTACTATTTTTATTTGGAGACACAAACTGCTCTAGCAGTTCCAGATGAAGATAACTGTATGGTTGTCTATACATCAAGTCAGTGCCCTGAATACACAGGTAGTGCAATTGCTAGTTGTCTTGGTGTCCCCGAGCATAACATCCGTGTCGTCACAAGAAGGGTTGGAGGTGGCTTTGGAGGCAAGGCAGTGAAAGCAATGATTGTGAGTATCTGCTACTTCTAATAGAGAGAAAATGAACAAAAACATTAATTTTATGCATGGAGTTTTGGATCATTATTTGGTTCTTTTCCCCTAATATCATATGGTTAATTTGGTGGTCTTCACACAAAATAGCCCGGCAGAATTAATGTTTTATAGCTGTTATACATAGATTACATATTGATTATACACGATTATATACATGTTATGAATGGATTATACGTATATTATACATCCGCCGGCTATTTTTAGTATAATTAGTTGATGTGTTCAAAGTAGTGCAGTGGTATGTGGAAAACATGGCCAAAGTTCATGCGCAGCAGCTATCAATATGTTCCAACTCTAAGAAAGCACAAAATGTCCCCACATTTTTTTTCTGATGTCTTCTTTAATAACGTCTTTTATGCTTGCCGATTATGTATACATTGATTACCTTTTGGATTTTAATATTGAAATGATTGATATAAATGCATTGATCCGGATAAACTATTAAATGATAATGGAAGACGTGAATAATCTTGAAATGAGTGCCGACCTTACCTTTCAAGACATCATATTCATTTCCCCTCGTCCCTTTATATTTCTCTCTTTCTGTTGCAACAACATTTCTAGTTCTGTTGTGAAAATCTGTACATTGATTTGTTAGGTCTCCACAGCTTGTGCACTTGCAGCGCTCAAGTTACAATGTCCTGTCAGGATGTACCTCAACCGAAAGACTGACATGATAATGGCAGGAGGGAGACACCCCATGAAAATAACATACAGCGTTGGATTTAAGTCGAATGGCAAAATCACCGCCTTACATCTTGATGTATTGGTAAATGCTGGGATCACTGAAGATATAAGCCCTGTGATACCTTCAAACTTTATTGGGGCTCTCAAAAAATATGATTGGGGTGCATTGTCTTTTGATGTAAAAGTATGTAAGACGAACCTTACCACCAAATCAGCTATGCGTGGCCCGGGGGAGGTGCAAGGATCTTATATTGCCGAAGCTATAATGGAACATGTAGCAAGTGTACTGTCTCTGGAGGTGGACTCCGTTAGAAACCAAAATGTTCATACCTTCGAAAGTCTAAAATTATTCTATGGGGATTGTGCAGGAGTAATAGGTGATTATACTTTGCCAGGTATCATTGATAAGTTGGCGACATCCTCAAATTTTGTCCGAAGAACTGAAATGATAGAACAATATAACCAGCTAAATATGTGGAAGAAAAGGGGAATTTCTCGAGTGCCACTAGTTTATGAAGCTATGCAACGACCAACGCCTGGAAAAGTAAGCATTCTTTCGGATGGATCAGTAGTTGTAGAGGTTGGAGGTATTGAAATCGGCCAAGGTCTATGGACAAAGGTCAAACAAATGACTGCCTATGGTCTTAGCTTAATTGAAAGTAGTTGGAGTGAAGAACTTGTGGAGAAAGTACGCGTCATACAAGCAGACACTTTAAGTTTAGTGCAAGGCGGGTTTACTGCTGGAAGCACTACATCTGAATCGAGCTGTGAAGCAGTCAGACTGTGCTGCAAAATATTAGTTGAAAGACTAACCCCTCTAAAGAAGAATTTGCAAGAAAAAAATGGTTCCGTTGATTGGACTACGCTGATTCGCCAGGTTTTACTCTTTTGACTTTCTTATATTACAATTTTGTGTGTTATAATCATTTGAGCGTCTCTTCATAAGGCACATTTCATGCAATCAAAGCTGATTCCATGTTATTCCTTTAGACGTATTTCTTCTCAGGCCTATGCCATGTCACTAATAAATACCTTGTTCACTGTATTGATTATTCGAAATAGAATTCCATGTTCTAAAGATGATTTCAAATTTAAGTATATATGTTAAAGGGCAGAGACAGACTCAAACGGGAAACATCTGTCAGTATAGTGTTGGACTTTAGTTTTTAAGACGATGATAAATTAATTGAAATTTGAAAGGGAATTATATGAAATCTAGTGCCTAATCCATTTGTGTGAACTAAATCTCTTAAAGCATTAATATATAAACAAAAAACACTCCAACTTTTGAGTATGCACATCTAGACACCTCAACTCATCTCCATTGTGGTAGTTGAACACTCCAGCTGACAAAAATGATCATCTCGACACCTCCAAAATTTGTGTCACATCAGCATCAGGTGTCTACGAGACAAAGTGAGACAAGTTGGAGTGTTTAGTTGGCAGTTGAGATGTCTGGATGTGCACCCTTTAAAGTTGGAGTGCTTACTTGCAAGTTGAGGCTAAGTTTAAGTGCCTGTTTATGTACTATGCCTTTGTTTATATGTCGAATAACATTGGATGTGCAAATTCTGATCCTTTCTTACCCCCCCTCAGGCAAAATTTCAAGCGATAAACTTAGCAGCAAACTCTTATTATGTGCCAGAATTGAGCTCCATGAAGTATCTGAACTATGGAGCTGCTGTCAGCGAGGTAATCTTGTAGCTCAATGTGGAAAGACTTATTGCTTCGCCTGGTCCTCAAGGATTACATCAATTCTCGATATCCTAATGAGCACAAAACACTTTGCCTGATATTCCAATTTTGGAGCATTTAGCAACCATATGGTCCAGCTGAAGCACCTTTTTACTGGAAACTAACAATTGCGATGTCGGTTTTGCAGGTGGAGATAGACATCCTGACTGGAGAAACAAAAATTTTGCAATCAGATATAATATATGACTGTGGACAGAGTTTGAACCCAGCTGTTGATATGGGACAGGTCTATCGAAAATTTGTCTCGATTTACTTCAAGTTTTAGCTTTTATAATGCTGATTTGTTTAAACAATTACGAAGTATATGACGGTAGCTGTAATTCAATCTTGTGAAGAACTATTAATCACCTCCTTAATCTATTTTATCATCTTAGCTTAGCCAGCATGGACCTTCAATTGTCAACGATGTTCGAGTAGTGATTTTTCCATCAAAGTTTCCTATTGATCACCTCTTCAATAACAATTTATTTTCTTTCAGATCGAAGGGGCTTTTGTACAAGGGATTGGATTTTTTATGCTCGAAGAATATCTTACAAATACAGACGGATTGGTTGTTACAGATAGCACTTGGACATATAAGATCCCCACAATCGACACAATACCCAAACGTTTCAATGTTCAAGTGCTAAACACTGGACATCACGAGAAACGTATTCTCTCGTCTAAAGGTACACTGTTCTTTCTTCAATTCCATCACTCAGACAAGATTTTAAATTTTTTCGTACTGCTAGGATGACTTGTGAGTGAATCCTCACACACATTTTCCATAAGGTTGAGTGCAAACTATAATTAAAATGAGTATAAGTTAACCGTTGATAGTGAAAGTGTTATTAAAATGAGCGTGTGATGGTAGTGCATCGCAGTAGTAGATGAAGCACCACAACAAGGTTTATGATGGAGCAATAACGGTGACTCGACAGAGGAAGTTCCATAAGAAAATGATTTTGACTTAGTGGTCTTCCCTTCCTTGGTCTAAGAATCAATGACATAACAAAAGGTAGCTGCAACTCTACCAATACGTGCCTCGAGGGAACTGTCGCGGATTAGCTTGTTAACTTTCGTGTCTAAATATCTTAGCTTAGAGGAAAAAGTGAAACCATTAGTTTTAGATGAGTTTGTGAAGCCATTTTGCATGATTCATTGATTCGACTATAACGACTTTTTGCAGCATCTGGTGAACCACCACTGCTTTTGGCGTCCTCAGTTCATTGTGCAACAAGAGCAGCTATTAAAGCAGCGCGAAAACAGCTTAAACTTTGGGGCAAGCTCGACGAGTCAGATACAGATTTCTATCTGGATGTCCCTGCCACATTGCCTGTAGTGAAGACACAGTGTGGCCTGAATTATGTGGAGAAATACTTGGAAACTTTGCTTGATCTGAAATCTAGCTAAATGCTTGATTTCTAGCTTTTTCGGGGCACATTGTTGTCTGGATCTATGTTTACTCAGACTCTGCAAAAATATTGTCGTACTCATGTCAGATTCACTTTTAGAGGATCCGACATGGATCCATCGATATTTTTGAAGAGTACGAGCAACATAGGATAAATAGGTTACTCCATTAGCTTTGATAAGATGACTTGCTTTGTTATGTTCCATCAAATAGCATAAGCAAATTTTCTATTTTCATGTATACAAACCTTATATTAAATCAACAAGTTTGCACATTG
ATGGATGAAACACTGAAAAATGGGATCTTGGTTTTTGCTGTGAATGGAAAAAGATACGAGCTTCCTAGTGTTGACCCTTCAACTACTTTGCTTCAGTTTTTGCGCAGTGAAACTTGCTTCAAAAGTCCTAAGTTAGGCTGTGGTGAAGGTAATACTTTTTCCTCTCTCCTTGTGTACATATGTGTAGAGGCGAATTTAGAATTTTAACTCGCTAGGTTCAACTTTTAAGATTCTTAGCATTTGAACTGGTTTGACTTGTGAAACTTATGAGTTCAAAATTTGAATATTTAGTTGGGCTATGTGTAGTTGTTCAATTATATGTTTGTTTTGGTGCAAAGTGCATAGTAAATGCTGAAAGCTTTGGATTTGATATTGGTGTTTTTCTTCTAATGTGTTGGCTCCTTTCGCATCACTTTCTTATTTGTTTTTTTCTTGAAAATTGGGTATCTCTAAATGTGTATAGCTCTTCATTATTAAACTTTACTCCTTTGGTCTAAAGAGTTGCCAAAAAAGGAAAGGGATGTTCTTTTTTAAAAATGGACTAAAAAGGAAAATAGAATAAACAAATTGAAACAGAGGGAGTATTATGTATGGAAATCAAGCAGTGTTATACTTATAGGATTGAAACTATGTGACTTGAGTTGAGGGGAAAGGAAAAGAAAAGAGAGTAGTATTTGTCCTGCTATGTTCTTTTCTTTGTGCTTCTTGGTTTAGTTCTGTACTTTTAAGTTCCTGCTGGTTATGGAGTCCTTCTGTAGCACATGAATTGGTTTCTATTAGTAATTTGGATGTTTTCATTTTATAGGTTACTACGACTTTATGTTTCCTATTCCTTTTTGCATTTCTGATTGTTAAGAAGCTAGGGGAGCTAATGGTATAGTCTTATGCTTATCTTTTGTATCTATCTATAACTTAAAGAATTCTAGTTAATGTGAGGTATGCCATTCTTTTATTCTATTGGCAAGTTTAGACAAGGTTGAAATCATTTTACTTTGAAGAAGTTTTCAGCTCGTCATTTTGAATCTTTAATGTATCTGATGTTAATTGTGCAAAATGAGAATTTAGTTTGAGATAAAGTTACTCATTTTCTAATTTGAATGGTTCAGGTGGTTGTGGTGCTTGTGTTGTTCTTCTCTCAAAGTATGATCCCCAGCTTAAACGGGTTGAAGATTTTAGTGTGAGTTCATGCCTTACGCTTCTTTGCAGTTTAAATGGTTGTGGAATTACTACAAGTGATGGCCTTGGAAACAACAAGGACGGTTTCCACTCAATTCATGAAAGGTTTGCAGGTTTTCATGCTTCTCAATGTGGATATTGCACTCCAGGAATGTGTATGTCCTTTTTTTCGGCTCTTATCAACGCTGATAAAGCAAACAGTACAGATCCTTCAGCAGGATTCTCTAAGTTGACTGCAGCTGAAGCCGAAAAGTCTATAGCAGGGAATCTTTGTCGTTGTACTGGATACCGTCCCATTGCTGATGCCTGCAAGACTTTTGCTGCAGATGTTGATATAGAGGATTTGGGGTTCAATTCTTTTTGGAAAAAGGAAGATTCCAGGGATATGAAAGTGAGCAAGTTACCTCCCTATGATCCAAGTAAGAGCTTGAATTTTAGTACATTTCCTCGATTCTTTAAAAGTGAACCTGCAGCATATTTGGACTCCAGAAAGTATCCATGGGATACTCCTGCTTCTGTTGATGAGCTTCGAAGTTTGTTGCAATCCAATTTGGCTGAAAATGGGGCAAGAATTAAGCTGGTTGTTGGTAACACAGGCACTGGATATTACAAGGAAACACAGAGATATGACCGATACATTGATCTGAGATATATCCCTGAGCTTTCAATCATCAGATTTGATCACATAGGAATTGAAGTAGGGGCTGCTGTTACTATCTCTAAACTTATTTCATTTTTGAAGGAGGAAAACAAAATCAATTTGAGTTCATACGGAAATCTGGTTAGCCAAAAGTTGGCTCAGCACATGGAGAAGATTGCTTCACCATTCGTTAGAAACTCAGCTAGTGTTGGGGGGAATTTGGTTATGGCACAGAAAAACGGTTTCCCTTCCGATATTGCTACGTTATTTCTTGGTCTGGGTGCTACTATCTGTGTATTGACTAGTCAAGGACATGAAAAACTCACATTTGAGGAGTTCTTAGGGAGACCACCACTAGACTCGAGGAGTGTGCTGCTTACTCTTTTGATTCCATTCAAAAAGGAAGGAAGTCCAACCTGTTCTAAGTTTTTGTTTGAAACCTATCGAGCTTCACCACGACCTCTTGGAAATGCACTGCCATATGTAAATGCTGCTTTCCTTGCTGATGTTTCTTCCCACGGGAATGGGATCCTGATAAATGATATCCAGTTGGCTTTTGGTGCTTATGGCACAAGACATCCGACAAGAGCCAAACAAGTAGAAGAACATCTAACCGGGAAGATATTAAGTGTTAATGTATTATCGGAAGCACTTAAATTAGTCAAACAAGTTGTGGTACCTGAAGATGGCACTACACACCCATATTACAGGTCAAGCATGGTAGTCAGTTTTCTTTTCAAGTTTCTTTTTTGCTTCACCAATGTTGATCCCATGAAATATGGTGGTTTATTAAATGGGATCACTTTGGTAGAGGAGGTCTCGGAAAGTAACAAAGACGGTTATATAAGTGAAGGGAAACTACACACACTATTATCTTCTGCTAAGCAGGTTGTGGAGTCAAGCAAAGAGTACCATCCAGTGGGTGAACCAATGAAAAAATTTGGAGCCTCCATGCAAGCTTCTGGTATGTTTTCTCCTTATGTATTTTATTTCACATTATGTATGTAACCAGAGTTTTCTGTCATTTTGAATCCTATTTGTGGCTTTGATGTTGCCGGCTAAATTGGTCAGAGATGAGGCAAACTGATTAAAGGCCTACATGTATTACCCATGTAAAGTTTTCAAGATAAATTGAAATGGAAGTTCTTATGCACCTGACTGAATATTCAGATTTACATGCAATATCTTAATATTCAAAAGTGTATTCAGATTCAGACGTTTTCATATTTGAAAAGAACAACCAGATGTCTTATTGTCTTAGTGTAAAAAACAATTACAATTGCAGGTGAAGCTGTTTATGTAGATGATATTCCATCACCACCAAACTGCCTATATGGAGCATTTATCTATAGTACAAGACCATTAGCAGGGGTAAAGAGCGTCCACTTTGGGTCCAATTCATTACCTGATGGAGTTGCTGCCATTATTACTTTTAAAGATATCCCGAGCGGAGGGGCAAATGTAGGATCCAAGACCATTTTTTCCCCTGAGCCTTTATTTGCAGATGATCTAGCCCGATATGCTGGTGACCGAATTGCTTTTGTGGTAAGCTCTTAGTTTCCAGAATCTTTCAGCTAGAATAGGTTATGCAAGATGATTGCTTGTATACTTACATTTTAAACTTTTTCTTTTATGTTCAATGTTGTGTCAAATAACTCAGGTTGCTGAAAGTCAGAGGTCTGCAGATGTGGCTGCAAGCATGGCCATTGTTGAATATGACACCGAAAATATAGATTCTCCGATTTTAACCGTTGAGGAAGCCGTTCAGAAATCCAGTTTTTTCCAAGTCCCACCATTATTTTATCCAAAACAAGTTGGTGATTTCTCAAAAGGAATGACTGAAGCTGACCACAAGATTCTCTCTGCTGAGGTACTTTTGATTTGTTCTTGAAAGGAGGTGTGACCATCTCATCTAAAAGTTTAAGGGATTAGGAAGAGCGGATTTTATTTACTGAATTATGTCTTTTAATAGTTTCAAATTTATCTGTGATTGGTCCTGCATATAAATCTTTTGCAGACGAGACTTGGGTCTCAGTACTATTTTTATTTGGAGACACAAACTGCTCTAGCAGTTCCAGATGAAGATAACTGTATGGTTGTCTATACATCAAGTCAGTGCCCTGAATACACAGGTAGTGCAATTGCTAGTTGTCTTGGTGTCCCCGAGCATAACATCCGTGTCGTCACAAGAAGGGTTGGAGGTGGCTTTGGAGGCAAGGCAGTGAAAGCAATGATTGTGAGTATCTGCTACTTCTAATAGAGAGAAAATGAACAAAAACATTAATTTTATGCATGGAGTTTTGGATCATTATTTGGTTCTTTTCCCCTAATATCATATGGTTAATTTGGTGGTCTTCACACAAAATAGCCCGGCAGAATTAATGTTTTATAGCTGTTATACATAGATTACATATTGATTATACACGATTATATACATGTTATGAATGGATTATACGTATATTATACATCCGCCGGCTATTTTTAGTATAATTAGTTGATGTGTTCAAAGTAGTGCAGTGGTATGTGGAAAACATGGCCAAAGTTCATGCGCAGCAGCTATCAATATGTTCCAACTCTAAGAAAGCACAAAATGTCCCCACATTTTTTTTCTGATGTCTTCTTTAATAACGTCTTTTATGCTTGCCGATTATGTATACATTGATTACCTTTTGGATTTTAATATTGAAATGATTGATATAAATGCATTGATCCGGATAAACTATTAAATGATAATGGAAGACGTGAATAATCTTGAAATGAGTGCCGACCTTACCTTTCAAGACATCATATTCATTTCCCCTCGTCCCTTTATATTTCTCTCTTTCTGTTGCAACAACATTTCTAGTTCTGTTGTGAAAATCTGTACATTGATTTGTTAGGTCTCCACAGCTTGTGCACTTGCAGCGCTCAAGTTACAATGTCCTGTCAGGATGTACCTCAACCGAAAGACTGACATGATAATGGCAGGAGGGAGACACCCCATGAAAATAACATACAGCGTTGGATTTAAGTCGAATGGCAAAATCACCGCCTTACATCTTGATGTATTGGTAAATGCTGGGATCACTGAAGATATAAGCCCTGTGATACCTTCAAACTTTATTGGGGCTCTCAAAAAATATGATTGGGGTGCATTGTCTTTTGATGTAAAAGTATGTAAGACGAACCTTACCACCAAATCAGCTATGCGTGGCCCGGGGGAGGTGCAAGGATCTTATATTGCCGAAGCTATAATGGAACATGTAGCAAGTGTACTGTCTCTGGAGGTGGACTCCGTTAGAAACCAAAATGTTCATACCTTCGAAAGTCTAAAATTATTCTATGGGGATTGTGCAGGAGTAATAGGTGATTATACTTTGCCAGGTATCATTGATAAGTTGGCGACATCCTCAAATTTTGTCCGAAGAACTGAAATGATAGAACAATATAACCAGCTAAATATGTGGAAGAAAAGGGGAATTTCTCGAGTGCCACTAGTTTATGAAGCTATGCAACGACCAACGCCTGGAAAAGTAAGCATTCTTTCGGATGGATCAGTAGTTGTAGAGGTTGGAGGTATTGAAATCGGCCAAGGTCTATGGACAAAGGTCAAACAAATGACTGCCTATGGTCTTAGCTTAATTGAAAGTAGTTGGAGTGAAGAACTTGTGGAGAAAGTACGCGTCATACAAGCAGACACTTTAAGTTTAGTGCAAGGCGGGTTTACTGCTGGAAGCACTACATCTGAATCGAGCTGTGAAGCAGTCAGACTGTGCTGCAAAATATTAGTTGAAAGACTAACCCCTCTAAAGAAGAATTTGCAAGAAAAAAATGGTTCCGTTGATTGGACTACGCTGATTCGCCAGGTTTTACTCTTTTGACTTTCTTATATTACAATTTTGTGTGTTATAATCATTTGAGCGTCTCTTCATAAGGCACATTTCATGCAATCAAAGCTGATTCCATGTTATTCCTTTAGACGTATTTCTTCTCAGGCCTATGCCATGTCACTAATAAATACCTTGTTCACTGTATTGATTATTCGAAATAGAATTCCATGTTCTAAAGATGATTTCAAATTTAAGTATATATGTTAAAGGGCAGAGACAGACTCAAACGGGAAACATCTGTCAGTATAGTGTTGGACTTTAGTTTTTAAGACGATGATAAATTAATTGAAATTTGAAAGGGAATTATATGAAATCTAGTGCCTAATCCATTTGTGTGAACTAAATCTCTTAAAGCATTAATATATAAACAAAAAACACTCCAACTTTTGAGTATGCACATCTAGACACCTCAACTCATCTCCATTGTGGTAGTTGAACACTCCAGCTGACAAAAATGATCATCTCGACACCTCCAAAATTTGTGTCACATCAGCATCAGGTGTCTACGAGACAAAGTGAGACAAGTTGGAGTGTTTAGTTGGCAGTTGAGATGTCTGGATGTGCACCCTTTAAAGTTGGAGTGCTTACTTGCAAGTTGAGGCTAAGTTTAAGTGCCTGTTTATGTACTATGCCTTTGTTTATATGTCGAATAACATTGGATGTGCAAATTCTGATCCTTTCTTACCCCCCCTCAGGCAAAATTTCAAGCGATAAACTTAGCAGCAAACTCTTATTATGTGCCAGAATTGAGCTCCATGAAGTATCTGAACTATGGAGCTGCTGTCAGCGAGGTAATCTTGTAGCTCAATGTGGAAAGACTTATTGCTTCGCCTGGTCCTCAAGGATTACATCAATTCTCGATATCCTAATGAGCACAAAACACTTTGCCTGATATTCCAATTTTGGAGCATTTAGCAACCATATGGTCCAGCTGAAGCACCTTTTTACTGGAAACTAACAATTGCGATGTCGGTTTTGCAGGTGGAGATAGACATCCTGACTGGAGAAACAAAAATTTTGCAATCAGATATAATATATGACTGTGGACAGAGTTTGAACCCAGCTGTTGATATGGGACAGGTCTATCGAAAATTTGTCTCGATTTACTTCAAGTTTTAGCTTTTATAATGCTGATTTGTTTAAACAATTACGAAGTATATGACGGTAGCTGTAATTCAATCTTGTGAAGAACTATTAATCACCTCCTTAATCTATTTTATCATCTTAGCTTAGCCAGCATGGACCTTCAATTGTCAACGATGTTCGAGTAGTGATTTTTCCATCAAAGTTTCCTATTGATCACCTCTTCAATAACAATTTATTTTCTTTCAGATCGAAGGGGCTTTTGTACAAGGGATTGGATTTTTTATGCTCGAAGAATATCTTACAAATACAGACGGATTGGTTGTTACAGATAGCACTTGGACATATAAGATCCCCACAATCGACACAATACCCAAACGTTTCAATGTTCAAGTGCTAAACACTGGACATCACGAGAAACGTATTCTCTCGTCTAAAGGTACACTGTTCTTTCTTCAATTCCATCACTCAGACAAGATTTTAAATTTTTTCGTACTGCTAGGATGACTTGTGAGTGAATCCTCACACACATTTTCCATAAGGTTGAGTGCAAACTATAATTAAAATGAGTATAAGTTAACCGTTGATAGTGAAAGTGTTATTAAAATGAGCGTGTGATGGTAGTGCATCGCAGTAGTAGATGAAGCACCACAACAAGGTTTATGATGGAGCAATAACGGTGACTCGACAGAGGAAGTTCCATAAGAAAATGATTTTGACTTAGTGGTCTTCCCTTCCTTGGTCTAAGAATCAATGACATAACAAAAGGTAGCTGCAACTCTACCAATACGTGCCTCGAGGGAACTGTCGCGGATTAGCTTGTTAACTTTCGTGTCTAAATATCTTAGCTTAGAGGAAAAAGTGAAACCATTAGTTTTAGATGAGTTTGTGAAGCCATTTTGCATGATTCATTGATTCGACTATAACGACTTTTTGCAGCATCTGGTGAACCACCACTGCTTTTGGCGTCCTCAGTTCATTGTGCAACAAGAGCAGCTATTAAAGCAGCGCGAAAACAGCTTAAACTTTGGGGCAAGCTCGACGAGTCAGATACAGATTTCTATCTGGATGTCCCTGCCACATTGCCTGTAGTGAAGACACAGTGTGGCCTGAATTATGTGGAGAAATACTTGGAAACTTTGCTTGATCTGAAATCTAGCTAAATGCTTGATTTCTAGCTTTTTCGGGGCACATTGTTGTCTGGATCTATGTTTACTCAGACTCTGCAAAAATATTGTCGTACTCATGTCAGATTCACTTTTAGAGGATCCGACATGGATCCATCGATATTTTTGAAGAGTACGAGCAACATAGGATAAATAGGTTACTCCATTAGCTTTGATAAGATGACTTGCTTTGTTATGTTCCATCAAATAGCATAAGCAAATTTTCTATTTTCATGTATACAAACCTTATATTAAATCAACAAGTTTGCACATTG
Download sequence region |
Get flanking sequences on SL2.50ch01
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![]() ![]() | terms associated with this mRNA |
![]() ![]() | spliced cDNA sequence, including UTRs |
>Solyc01g009230.2.1 Xanthine dehydrogenase/oxidase (AHRD V1 ***- A9YL93_RABIT); contains Interpro domain(s) IPR016208 Aldehyde oxidase/xanthine dehydrogenase
ATGGATGAAACACTGAAAAATGGGATCTTGGTTTTTGCTGTGAATGGAAAAAGATACGAGCTTCCTAGTGTTGACCCTTCAACTACTTTGCTTCAGTTTTTGCGCAGTGAAACTTGCTTCAAAAGTCCTAAGTTAGGCTGTGGTGAAGGTGGTTGTGGTGCTTGTGTTGTTCTTCTCTCAAAGTATGATCCCCAGCTTAAACGGGTTGAAGATTTTAGTGTGAGTTCATGCCTTACGCTTCTTTGCAGTTTAAATGGTTGTGGAATTACTACAAGTGATGGCCTTGGAAACAACAAGGACGGTTTCCACTCAATTCATGAAAGGTTTGCAGGTTTTCATGCTTCTCAATGTGGATATTGCACTCCAGGAATGTGTATGTCCTTTTTTTCGGCTCTTATCAACGCTGATAAAGCAAACAGTACAGATCCTTCAGCAGGATTCTCTAAGTTGACTGCAGCTGAAGCCGAAAAGTCTATAGCAGGGAATCTTTGTCGTTGTACTGGATACCGTCCCATTGCTGATGCCTGCAAGACTTTTGCTGCAGATGTTGATATAGAGGATTTGGGGTTCAATTCTTTTTGGAAAAAGGAAGATTCCAGGGATATGAAAGTGAGCAAGTTACCTCCCTATGATCCAAGTAAGAGCTTGAATTTTAGTACATTTCCTCGATTCTTTAAAAGTGAACCTGCAGCATATTTGGACTCCAGAAAGTATCCATGGGATACTCCTGCTTCTGTTGATGAGCTTCGAAGTTTGTTGCAATCCAATTTGGCTGAAAATGGGGCAAGAATTAAGCTGGTTGTTGGTAACACAGGCACTGGATATTACAAGGAAACACAGAGATATGACCGATACATTGATCTGAGATATATCCCTGAGCTTTCAATCATCAGATTTGATCACATAGGAATTGAAGTAGGGGCTGCTGTTACTATCTCTAAACTTATTTCATTTTTGAAGGAGGAAAACAAAATCAATTTGAGTTCATACGGAAATCTGGTTAGCCAAAAGTTGGCTCAGCACATGGAGAAGATTGCTTCACCATTCGTTAGAAACTCAGCTAGTGTTGGGGGGAATTTGGTTATGGCACAGAAAAACGGTTTCCCTTCCGATATTGCTACGTTATTTCTTGGTCTGGGTGCTACTATCTGTGTATTGACTAGTCAAGGACATGAAAAACTCACATTTGAGGAGTTCTTAGGGAGACCACCACTAGACTCGAGGAGTGTGCTGCTTACTCTTTTGATTCCATTCAAAAAGGAAGGAAGTCCAACCTGTTCTAAGTTTTTGTTTGAAACCTATCGAGCTTCACCACGACCTCTTGGAAATGCACTGCCATATGTAAATGCTGCTTTCCTTGCTGATGTTTCTTCCCACGGGAATGGGATCCTGATAAATGATATCCAGTTGGCTTTTGGTGCTTATGGCACAAGACATCCGACAAGAGCCAAACAAGTAGAAGAACATCTAACCGGGAAGATATTAAGTGTTAATGTATTATCGGAAGCACTTAAATTAGTCAAACAAGTTGTGGTACCTGAAGATGGCACTACACACCCATATTACAGGTCAAGCATGGTAGTCAGTTTTCTTTTCAAGTTTCTTTTTTGCTTCACCAATGTTGATCCCATGAAATATGGTGGTTTATTAAATGGGATCACTTTGGTAGAGGAGGTCTCGGAAAGTAACAAAGACGGTTATATAAGTGAAGGGAAACTACACACACTATTATCTTCTGCTAAGCAGGTTGTGGAGTCAAGCAAAGAGTACCATCCAGTGGGTGAACCAATGAAAAAATTTGGAGCCTCCATGCAAGCTTCTGGTGAAGCTGTTTATGTAGATGATATTCCATCACCACCAAACTGCCTATATGGAGCATTTATCTATAGTACAAGACCATTAGCAGGGGTAAAGAGCGTCCACTTTGGGTCCAATTCATTACCTGATGGAGTTGCTGCCATTATTACTTTTAAAGATATCCCGAGCGGAGGGGCAAATGTAGGATCCAAGACCATTTTTTCCCCTGAGCCTTTATTTGCAGATGATCTAGCCCGATATGCTGGTGACCGAATTGCTTTTGTGGTTGCTGAAAGTCAGAGGTCTGCAGATGTGGCTGCAAGCATGGCCATTGTTGAATATGACACCGAAAATATAGATTCTCCGATTTTAACCGTTGAGGAAGCCGTTCAGAAATCCAGTTTTTTCCAAGTCCCACCATTATTTTATCCAAAACAAGTTGGTGATTTCTCAAAAGGAATGACTGAAGCTGACCACAAGATTCTCTCTGCTGAGACGAGACTTGGGTCTCAGTACTATTTTTATTTGGAGACACAAACTGCTCTAGCAGTTCCAGATGAAGATAACTGTATGGTTGTCTATACATCAAGTCAGTGCCCTGAATACACAGGTAGTGCAATTGCTAGTTGTCTTGGTGTCCCCGAGCATAACATCCGTGTCGTCACAAGAAGGGTTGGAGGTGGCTTTGGAGGCAAGGCAGTGAAAGCAATGATTGTCTCCACAGCTTGTGCACTTGCAGCGCTCAAGTTACAATGTCCTGTCAGGATGTACCTCAACCGAAAGACTGACATGATAATGGCAGGAGGGAGACACCCCATGAAAATAACATACAGCGTTGGATTTAAGTCGAATGGCAAAATCACCGCCTTACATCTTGATGTATTGGTAAATGCTGGGATCACTGAAGATATAAGCCCTGTGATACCTTCAAACTTTATTGGGGCTCTCAAAAAATATGATTGGGGTGCATTGTCTTTTGATGTAAAAGTATGTAAGACGAACCTTACCACCAAATCAGCTATGCGTGGCCCGGGGGAGGTGCAAGGATCTTATATTGCCGAAGCTATAATGGAACATGTAGCAAGTGTACTGTCTCTGGAGGTGGACTCCGTTAGAAACCAAAATGTTCATACCTTCGAAAGTCTAAAATTATTCTATGGGGATTGTGCAGGAGTAATAGGTGATTATACTTTGCCAGGTATCATTGATAAGTTGGCGACATCCTCAAATTTTGTCCGAAGAACTGAAATGATAGAACAATATAACCAGCTAAATATGTGGAAGAAAAGGGGAATTTCTCGAGTGCCACTAGTTTATGAAGCTATGCAACGACCAACGCCTGGAAAAGTAAGCATTCTTTCGGATGGATCAGTAGTTGTAGAGGTTGGAGGTATTGAAATCGGCCAAGGTCTATGGACAAAGGTCAAACAAATGACTGCCTATGGTCTTAGCTTAATTGAAAGTAGTTGGAGTGAAGAACTTGTGGAGAAAGTACGCGTCATACAAGCAGACACTTTAAGTTTAGTGCAAGGCGGGTTTACTGCTGGAAGCACTACATCTGAATCGAGCTGTGAAGCAGTCAGACTGTGCTGCAAAATATTAGTTGAAAGACTAACCCCTCTAAAGAAGAATTTGCAAGAAAAAAATGGTTCCGTTGATTGGACTACGCTGATTCGCCAGGCAAAATTTCAAGCGATAAACTTAGCAGCAAACTCTTATTATGTGCCAGAATTGAGCTCCATGAAGTATCTGAACTATGGAGCTGCTGTCAGCGAGGTGGAGATAGACATCCTGACTGGAGAAACAAAAATTTTGCAATCAGATATAATATATGACTGTGGACAGAGTTTGAACCCAGCTGTTGATATGGGACAGATCGAAGGGGCTTTTGTACAAGGGATTGGATTTTTTATGCTCGAAGAATATCTTACAAATACAGACGGATTGGTTGTTACAGATAGCACTTGGACATATAAGATCCCCACAATCGACACAATACCCAAACGTTTCAATGTTCAAGTGCTAAACACTGGACATCACGAGAAACGTATTCTCTCGTCTAAAGCATCTGGTGAACCACCACTGCTTTTGGCGTCCTCAGTTCATTGTGCAACAAGAGCAGCTATTAAAGCAGCGCGAAAACAGCTTAAACTTTGGGGCAAGCTCGACGAGTCAGATACAGATTTCTATCTGGATGTCCCTGCCACATTGCCTGTAGTGAAGACACAGTGTGGCCTGAATTATGTGGAGAAATACTTGGAAACTTTGCTTGATCTGAAATCTAGCTAAATGCTTGATTTCTAGCTTTTTCGGGGCACATTGTTGTCTGGATCTATGTTTACTCAGACTCTGCAAAAATATTGTCGTACTCATGTCAGATTCACTTTTAGAGGATCCGACATGGATCCATCGATATTTTTGAAGAGTACGAGCAACATAGGATAAATAGGTTACTCCATTAGCTTTGATAAGATGACTTGCTTTGTTATGTTCCATCAAATAGCATAAGCAAATTTTCTATTTTCATGTATACAAACCTTATATTAAATCAACAAGTTTGCACATTG
ATGGATGAAACACTGAAAAATGGGATCTTGGTTTTTGCTGTGAATGGAAAAAGATACGAGCTTCCTAGTGTTGACCCTTCAACTACTTTGCTTCAGTTTTTGCGCAGTGAAACTTGCTTCAAAAGTCCTAAGTTAGGCTGTGGTGAAGGTGGTTGTGGTGCTTGTGTTGTTCTTCTCTCAAAGTATGATCCCCAGCTTAAACGGGTTGAAGATTTTAGTGTGAGTTCATGCCTTACGCTTCTTTGCAGTTTAAATGGTTGTGGAATTACTACAAGTGATGGCCTTGGAAACAACAAGGACGGTTTCCACTCAATTCATGAAAGGTTTGCAGGTTTTCATGCTTCTCAATGTGGATATTGCACTCCAGGAATGTGTATGTCCTTTTTTTCGGCTCTTATCAACGCTGATAAAGCAAACAGTACAGATCCTTCAGCAGGATTCTCTAAGTTGACTGCAGCTGAAGCCGAAAAGTCTATAGCAGGGAATCTTTGTCGTTGTACTGGATACCGTCCCATTGCTGATGCCTGCAAGACTTTTGCTGCAGATGTTGATATAGAGGATTTGGGGTTCAATTCTTTTTGGAAAAAGGAAGATTCCAGGGATATGAAAGTGAGCAAGTTACCTCCCTATGATCCAAGTAAGAGCTTGAATTTTAGTACATTTCCTCGATTCTTTAAAAGTGAACCTGCAGCATATTTGGACTCCAGAAAGTATCCATGGGATACTCCTGCTTCTGTTGATGAGCTTCGAAGTTTGTTGCAATCCAATTTGGCTGAAAATGGGGCAAGAATTAAGCTGGTTGTTGGTAACACAGGCACTGGATATTACAAGGAAACACAGAGATATGACCGATACATTGATCTGAGATATATCCCTGAGCTTTCAATCATCAGATTTGATCACATAGGAATTGAAGTAGGGGCTGCTGTTACTATCTCTAAACTTATTTCATTTTTGAAGGAGGAAAACAAAATCAATTTGAGTTCATACGGAAATCTGGTTAGCCAAAAGTTGGCTCAGCACATGGAGAAGATTGCTTCACCATTCGTTAGAAACTCAGCTAGTGTTGGGGGGAATTTGGTTATGGCACAGAAAAACGGTTTCCCTTCCGATATTGCTACGTTATTTCTTGGTCTGGGTGCTACTATCTGTGTATTGACTAGTCAAGGACATGAAAAACTCACATTTGAGGAGTTCTTAGGGAGACCACCACTAGACTCGAGGAGTGTGCTGCTTACTCTTTTGATTCCATTCAAAAAGGAAGGAAGTCCAACCTGTTCTAAGTTTTTGTTTGAAACCTATCGAGCTTCACCACGACCTCTTGGAAATGCACTGCCATATGTAAATGCTGCTTTCCTTGCTGATGTTTCTTCCCACGGGAATGGGATCCTGATAAATGATATCCAGTTGGCTTTTGGTGCTTATGGCACAAGACATCCGACAAGAGCCAAACAAGTAGAAGAACATCTAACCGGGAAGATATTAAGTGTTAATGTATTATCGGAAGCACTTAAATTAGTCAAACAAGTTGTGGTACCTGAAGATGGCACTACACACCCATATTACAGGTCAAGCATGGTAGTCAGTTTTCTTTTCAAGTTTCTTTTTTGCTTCACCAATGTTGATCCCATGAAATATGGTGGTTTATTAAATGGGATCACTTTGGTAGAGGAGGTCTCGGAAAGTAACAAAGACGGTTATATAAGTGAAGGGAAACTACACACACTATTATCTTCTGCTAAGCAGGTTGTGGAGTCAAGCAAAGAGTACCATCCAGTGGGTGAACCAATGAAAAAATTTGGAGCCTCCATGCAAGCTTCTGGTGAAGCTGTTTATGTAGATGATATTCCATCACCACCAAACTGCCTATATGGAGCATTTATCTATAGTACAAGACCATTAGCAGGGGTAAAGAGCGTCCACTTTGGGTCCAATTCATTACCTGATGGAGTTGCTGCCATTATTACTTTTAAAGATATCCCGAGCGGAGGGGCAAATGTAGGATCCAAGACCATTTTTTCCCCTGAGCCTTTATTTGCAGATGATCTAGCCCGATATGCTGGTGACCGAATTGCTTTTGTGGTTGCTGAAAGTCAGAGGTCTGCAGATGTGGCTGCAAGCATGGCCATTGTTGAATATGACACCGAAAATATAGATTCTCCGATTTTAACCGTTGAGGAAGCCGTTCAGAAATCCAGTTTTTTCCAAGTCCCACCATTATTTTATCCAAAACAAGTTGGTGATTTCTCAAAAGGAATGACTGAAGCTGACCACAAGATTCTCTCTGCTGAGACGAGACTTGGGTCTCAGTACTATTTTTATTTGGAGACACAAACTGCTCTAGCAGTTCCAGATGAAGATAACTGTATGGTTGTCTATACATCAAGTCAGTGCCCTGAATACACAGGTAGTGCAATTGCTAGTTGTCTTGGTGTCCCCGAGCATAACATCCGTGTCGTCACAAGAAGGGTTGGAGGTGGCTTTGGAGGCAAGGCAGTGAAAGCAATGATTGTCTCCACAGCTTGTGCACTTGCAGCGCTCAAGTTACAATGTCCTGTCAGGATGTACCTCAACCGAAAGACTGACATGATAATGGCAGGAGGGAGACACCCCATGAAAATAACATACAGCGTTGGATTTAAGTCGAATGGCAAAATCACCGCCTTACATCTTGATGTATTGGTAAATGCTGGGATCACTGAAGATATAAGCCCTGTGATACCTTCAAACTTTATTGGGGCTCTCAAAAAATATGATTGGGGTGCATTGTCTTTTGATGTAAAAGTATGTAAGACGAACCTTACCACCAAATCAGCTATGCGTGGCCCGGGGGAGGTGCAAGGATCTTATATTGCCGAAGCTATAATGGAACATGTAGCAAGTGTACTGTCTCTGGAGGTGGACTCCGTTAGAAACCAAAATGTTCATACCTTCGAAAGTCTAAAATTATTCTATGGGGATTGTGCAGGAGTAATAGGTGATTATACTTTGCCAGGTATCATTGATAAGTTGGCGACATCCTCAAATTTTGTCCGAAGAACTGAAATGATAGAACAATATAACCAGCTAAATATGTGGAAGAAAAGGGGAATTTCTCGAGTGCCACTAGTTTATGAAGCTATGCAACGACCAACGCCTGGAAAAGTAAGCATTCTTTCGGATGGATCAGTAGTTGTAGAGGTTGGAGGTATTGAAATCGGCCAAGGTCTATGGACAAAGGTCAAACAAATGACTGCCTATGGTCTTAGCTTAATTGAAAGTAGTTGGAGTGAAGAACTTGTGGAGAAAGTACGCGTCATACAAGCAGACACTTTAAGTTTAGTGCAAGGCGGGTTTACTGCTGGAAGCACTACATCTGAATCGAGCTGTGAAGCAGTCAGACTGTGCTGCAAAATATTAGTTGAAAGACTAACCCCTCTAAAGAAGAATTTGCAAGAAAAAAATGGTTCCGTTGATTGGACTACGCTGATTCGCCAGGCAAAATTTCAAGCGATAAACTTAGCAGCAAACTCTTATTATGTGCCAGAATTGAGCTCCATGAAGTATCTGAACTATGGAGCTGCTGTCAGCGAGGTGGAGATAGACATCCTGACTGGAGAAACAAAAATTTTGCAATCAGATATAATATATGACTGTGGACAGAGTTTGAACCCAGCTGTTGATATGGGACAGATCGAAGGGGCTTTTGTACAAGGGATTGGATTTTTTATGCTCGAAGAATATCTTACAAATACAGACGGATTGGTTGTTACAGATAGCACTTGGACATATAAGATCCCCACAATCGACACAATACCCAAACGTTTCAATGTTCAAGTGCTAAACACTGGACATCACGAGAAACGTATTCTCTCGTCTAAAGCATCTGGTGAACCACCACTGCTTTTGGCGTCCTCAGTTCATTGTGCAACAAGAGCAGCTATTAAAGCAGCGCGAAAACAGCTTAAACTTTGGGGCAAGCTCGACGAGTCAGATACAGATTTCTATCTGGATGTCCCTGCCACATTGCCTGTAGTGAAGACACAGTGTGGCCTGAATTATGTGGAGAAATACTTGGAAACTTTGCTTGATCTGAAATCTAGCTAAATGCTTGATTTCTAGCTTTTTCGGGGCACATTGTTGTCTGGATCTATGTTTACTCAGACTCTGCAAAAATATTGTCGTACTCATGTCAGATTCACTTTTAGAGGATCCGACATGGATCCATCGATATTTTTGAAGAGTACGAGCAACATAGGATAAATAGGTTACTCCATTAGCTTTGATAAGATGACTTGCTTTGTTATGTTCCATCAAATAGCATAAGCAAATTTTCTATTTTCATGTATACAAACCTTATATTAAATCAACAAGTTTGCACATTG
![]() ![]() | translated polypeptide sequence |
>Solyc01g009230.2.1 Xanthine dehydrogenase/oxidase (AHRD V1 ***- A9YL93_RABIT); contains Interpro domain(s) IPR016208 Aldehyde oxidase/xanthine dehydrogenase
MDETLKNGILVFAVNGKRYELPSVDPSTTLLQFLRSETCFKSPKLGCGEGGCGACVVLLSKYDPQLKRVEDFSVSSCLTLLCSLNGCGITTSDGLGNNKDGFHSIHERFAGFHASQCGYCTPGMCMSFFSALINADKANSTDPSAGFSKLTAAEAEKSIAGNLCRCTGYRPIADACKTFAADVDIEDLGFNSFWKKEDSRDMKVSKLPPYDPSKSLNFSTFPRFFKSEPAAYLDSRKYPWDTPASVDELRSLLQSNLAENGARIKLVVGNTGTGYYKETQRYDRYIDLRYIPELSIIRFDHIGIEVGAAVTISKLISFLKEENKINLSSYGNLVSQKLAQHMEKIASPFVRNSASVGGNLVMAQKNGFPSDIATLFLGLGATICVLTSQGHEKLTFEEFLGRPPLDSRSVLLTLLIPFKKEGSPTCSKFLFETYRASPRPLGNALPYVNAAFLADVSSHGNGILINDIQLAFGAYGTRHPTRAKQVEEHLTGKILSVNVLSEALKLVKQVVVPEDGTTHPYYRSSMVVSFLFKFLFCFTNVDPMKYGGLLNGITLVEEVSESNKDGYISEGKLHTLLSSAKQVVESSKEYHPVGEPMKKFGASMQASGEAVYVDDIPSPPNCLYGAFIYSTRPLAGVKSVHFGSNSLPDGVAAIITFKDIPSGGANVGSKTIFSPEPLFADDLARYAGDRIAFVVAESQRSADVAASMAIVEYDTENIDSPILTVEEAVQKSSFFQVPPLFYPKQVGDFSKGMTEADHKILSAETRLGSQYYFYLETQTALAVPDEDNCMVVYTSSQCPEYTGSAIASCLGVPEHNIRVVTRRVGGGFGGKAVKAMIVSTACALAALKLQCPVRMYLNRKTDMIMAGGRHPMKITYSVGFKSNGKITALHLDVLVNAGITEDISPVIPSNFIGALKKYDWGALSFDVKVCKTNLTTKSAMRGPGEVQGSYIAEAIMEHVASVLSLEVDSVRNQNVHTFESLKLFYGDCAGVIGDYTLPGIIDKLATSSNFVRRTEMIEQYNQLNMWKKRGISRVPLVYEAMQRPTPGKVSILSDGSVVVEVGGIEIGQGLWTKVKQMTAYGLSLIESSWSEELVEKVRVIQADTLSLVQGGFTAGSTTSESSCEAVRLCCKILVERLTPLKKNLQEKNGSVDWTTLIRQAKFQAINLAANSYYVPELSSMKYLNYGAAVSEVEIDILTGETKILQSDIIYDCGQSLNPAVDMGQIEGAFVQGIGFFMLEEYLTNTDGLVVTDSTWTYKIPTIDTIPKRFNVQVLNTGHHEKRILSSKASGEPPLLLASSVHCATRAAIKAARKQLKLWGKLDESDTDFYLDVPATLPVVKTQCGLNYVEKYLETLLDLKSS*
MDETLKNGILVFAVNGKRYELPSVDPSTTLLQFLRSETCFKSPKLGCGEGGCGACVVLLSKYDPQLKRVEDFSVSSCLTLLCSLNGCGITTSDGLGNNKDGFHSIHERFAGFHASQCGYCTPGMCMSFFSALINADKANSTDPSAGFSKLTAAEAEKSIAGNLCRCTGYRPIADACKTFAADVDIEDLGFNSFWKKEDSRDMKVSKLPPYDPSKSLNFSTFPRFFKSEPAAYLDSRKYPWDTPASVDELRSLLQSNLAENGARIKLVVGNTGTGYYKETQRYDRYIDLRYIPELSIIRFDHIGIEVGAAVTISKLISFLKEENKINLSSYGNLVSQKLAQHMEKIASPFVRNSASVGGNLVMAQKNGFPSDIATLFLGLGATICVLTSQGHEKLTFEEFLGRPPLDSRSVLLTLLIPFKKEGSPTCSKFLFETYRASPRPLGNALPYVNAAFLADVSSHGNGILINDIQLAFGAYGTRHPTRAKQVEEHLTGKILSVNVLSEALKLVKQVVVPEDGTTHPYYRSSMVVSFLFKFLFCFTNVDPMKYGGLLNGITLVEEVSESNKDGYISEGKLHTLLSSAKQVVESSKEYHPVGEPMKKFGASMQASGEAVYVDDIPSPPNCLYGAFIYSTRPLAGVKSVHFGSNSLPDGVAAIITFKDIPSGGANVGSKTIFSPEPLFADDLARYAGDRIAFVVAESQRSADVAASMAIVEYDTENIDSPILTVEEAVQKSSFFQVPPLFYPKQVGDFSKGMTEADHKILSAETRLGSQYYFYLETQTALAVPDEDNCMVVYTSSQCPEYTGSAIASCLGVPEHNIRVVTRRVGGGFGGKAVKAMIVSTACALAALKLQCPVRMYLNRKTDMIMAGGRHPMKITYSVGFKSNGKITALHLDVLVNAGITEDISPVIPSNFIGALKKYDWGALSFDVKVCKTNLTTKSAMRGPGEVQGSYIAEAIMEHVASVLSLEVDSVRNQNVHTFESLKLFYGDCAGVIGDYTLPGIIDKLATSSNFVRRTEMIEQYNQLNMWKKRGISRVPLVYEAMQRPTPGKVSILSDGSVVVEVGGIEIGQGLWTKVKQMTAYGLSLIESSWSEELVEKVRVIQADTLSLVQGGFTAGSTTSESSCEAVRLCCKILVERLTPLKKNLQEKNGSVDWTTLIRQAKFQAINLAANSYYVPELSSMKYLNYGAAVSEVEIDILTGETKILQSDIIYDCGQSLNPAVDMGQIEGAFVQGIGFFMLEEYLTNTDGLVVTDSTWTYKIPTIDTIPKRFNVQVLNTGHHEKRILSSKASGEPPLLLASSVHCATRAAIKAARKQLKLWGKLDESDTDFYLDVPATLPVVKTQCGLNYVEKYLETLLDLKSS*
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![]() ![]() | [Associate new unigene] |
Unigene ID:
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![]() ![]() | [Associate new genbank sequence] |
Other genome matches | None |
![]() ![]() | [Associate publication] [Matching publications] |
Stomatal control in tomato with ABA-deficient roots: response of grafted plants to soil drying.
Journal of experimental botany (2002)
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The hypothesis that ABA produced by roots in drying soil is responsible for stomatal closure was tested with grafted plants constructed from the ABA-deficient tomato mutants, sitiens and flacca and their near-isogenic wild-type parent. Three types of experiments were conducted. In the first type, reciprocal grafts were made between the wild type and sitiens or flacca. Stomatal conductance accorded with the genotype of the shoot, not the root. Stomates closed in all of the grafted plants in response to soil drying, regardless of the root genotype, i.e. regardless of the ability of the roots to produce ABA. In the second type of experiment, wild-type shoots were grafted onto a split-root system consisting of one wild-type root grafted to one mutant (flacca or sitiens) root. Water was withheld from one root system, while the other was watered well so that the shoots did not experience any decline in water potential or loss of turgor. Stomates closed to a similar extent when water was withheld from the mutant roots or the wild-type roots. In the third type of experiment, grafted plants with wild-type shoots and either wild-type or sitiens roots were established in pots that could be placed inside a pressure chamber, and the pressure increased as the soil dried so that the shoots remained fully turgid throughout. Stomates closed as the soil dried, regardless of whether the roots were wild type or sitiens. These experiments demonstrate that stomatal closure in response to soil drying can occur in the absence of leaf water deficit, and does not require ABA production by roots. A chemical signal from roots leading to a change in apoplastic ABA levels in leaves may be responsible for the stomatal closure.
Holbrook, NM. Shashidhar, VR. James, RA. Munns, R.
Journal of experimental botany.
2002.
53(373).
1503-14.
Abnormal Stomatal Behavior in Wilty Mutants of Tomato.
(1966)
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An attempt was made to explain the excessive wilting tendency of 3 tomato mutants, notabilis, flacca, and sitiens. The control varieties in which these mutations were induced are Rheinlands Ruhm for flacca and sitiens and Lukullus for notabilis. Although all 3 mutants are alleles of separated loci, they seem to react similarly to water stress. The mutants wilt faster than the control plants when both are subjected to the same water stress. It was demonstrated by measurements of water loss from whole plants that all 3 mutants have much higher rates of transpiration than the control varieties, particularly at night. The extent of cuticular transpiration was compared in both kinds of plants by measuring the rate of water loss from detached drying leaves coated with vaseline on the lower surface. The difference in cuticular transpiration between the mutant and the control plants seems to be negligible. However, various facts point to stomata as the main factor responsible for the higher rates of water loss in the mutant plants. The stomata of the latter tend to open wider and to resist closure in darkness, in wilted leaves, and when treated with phenylmercuric acetate. Stomata of the 2 extreme mutants, sitiens and flacca, remain open even when the guard cells are plasmolyzed. The stomata of the mutants also are more frequent per unit of leaf surface and vary more in their size.
Tal, Moshe.
.
1966.
41(8).
1387-1391.
Dormancy and Germination of Abscisic Acid-Deficient Tomato Seeds : Studies with the sitiens Mutant.
Plant physiology (1992)
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The role of abscisic acid (ABA) in the dormancy induction of tomato (Lycopersicon esculentum) seeds was studied by comparison of the germination behavior of the ABA-deficient sitiens mutant with that of the isogenic wild-type genotype. Freshly harvested mutant seeds, in contrast to wild-type seeds, always readily germinate and even exhibit viviparous germination in overripe fruits. Crosses between mutant and wild-type and self-pollination of heterozygous plants show that in particular the ABA fraction of embryo and endosperm is decisive for the induction of dormancy. After-ripened wild-type seeds fully germinate in water but are more sensitive toward osmotic inhibition than mutant seeds. Germination of both wild-type and mutant seeds is equally sensitive toward inhibition by exogenous ABA. ABA content of mature wild-type seeds is about 10-fold the level found in mutant seeds. Nevertheless, it is argued that the differences in dormancy between the seeds of both genotypes are not a result of actual ABA levels in the mature seeds or fruits but a result of differences in ABA levels during seed development. It is hypothesized that the high levels of ABA that occur during seed development in wild-type seeds induce an inhibition of cell elongation of the radicle that can still be observed after long periods of dry storage.
Groot, SP. Karssen, CM.
Plant physiology.
1992.
99(3).
952-958.
Resistance to Botrytis cinerea in sitiens, an abscisic acid-deficient tomato mutant, involves timely production of hydrogen peroxide and cell wall modifications in the epidermis.
Plant physiology (2007)
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Plant defense mechanisms against necrotrophic pathogens, such as Botrytis cinerea, are considered to be complex and to differ from those that are effective against biotrophs. In the abscisic acid-deficient sitiens tomato (Solanum lycopersicum) mutant, which is highly resistant to B. cinerea, accumulation of hydrogen peroxide (H(2)O(2)) was earlier and stronger than in the susceptible wild type at the site of infection. In sitiens, H(2)O(2) accumulation was observed from 4 h postinoculation (hpi), specifically in the leaf epidermal cell walls, where it caused modification by protein cross-linking and incorporation of phenolic compounds. In wild-type tomato plants, H(2)O(2) started to accumulate 24 hpi in the mesophyll layer and was associated with spreading cell death. Transcript-profiling analysis using TOM1 microarrays revealed that defense-related transcript accumulation prior to infection was higher in sitiens than in wild type. Moreover, further elevation of sitiens defense gene expression was stronger than in wild type 8 hpi both in number of genes and in their expression levels and confirmed a role for cell wall modification in the resistant reaction. Although, in general, plant defense-related reactive oxygen species formation facilitates necrotrophic colonization, these data indicate that timely hyperinduction of H(2)O(2)-dependent defenses in the epidermal cell wall can effectively block early development of B. cinerea.
Asselbergh, B. Curvers, K. Franca, SC. Audenaert, K. Vuylsteke, M. Van Breusegem, F. Höfte, M.
Plant physiology.
2007.
144(4).
1863-77.
Does abscisic acid affect strigolactone biosynthesis?
The New phytologist (2010)
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SUMMARY: *Strigolactones are considered a novel class of plant hormones that, in addition to their endogenous signalling function, are exuded into the rhizosphere acting as a signal to stimulate hyphal branching of arbuscular mycorrhizal (AM) fungi and germination of root parasitic plant seeds. Considering the importance of the strigolactones and their biosynthetic origin (from carotenoids), we investigated the relationship with the plant hormone abscisic acid (ABA). *Strigolactone production and ABA content in the presence of specific inhibitors of oxidative carotenoid cleavage enzymes and in several tomato ABA-deficient mutants were analysed by LC-MS/MS. In addition, the expression of two genes involved in strigolactone biosynthesis was studied. *The carotenoid cleavage dioxygenase (CCD) inhibitor D2 reduced strigolactone but not ABA content of roots. However, in abamineSG-treated plants, an inhibitor of 9-cis-epoxycarotenoid dioxygenase (NCED), and the ABA mutants notabilis, sitiens and flacca, ABA and strigolactones were greatly reduced. The reduction in strigolactone production correlated with the downregulation of LeCCD7 and LeCCD8 genes in all three mutants. *The results show a correlation between ABA levels and strigolactone production, and suggest a role for ABA in the regulation of strigolactone biosynthesis.
López-Ráez, JA. Kohlen, W. Charnikhova, T. Mulder, P. Undas, AK. Sergeant, MJ. Verstappen, F. Bugg, TD. Thompson, AJ. Ruyter-Spira, C. Bouwmeester, H.
The New phytologist.
2010.
187(2).
343-54.
Identification of the tomato ABA-deficient mutant sitiens as a member of the ABA-aldehyde oxidase gene family using genetic and genomic analysis
Plant Growth Regulation (2010)
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The sitiens (sit) wilty mutant of tomato (Solanum lycopersicum L.) is deficient in functional enzyme activity at the final step in abscisic acid (ABA) biosynthesis. The biochemical lesion is believed to be an impaired aldehyde oxidase (AO). Molecular mapping using various interspecies crosses has previously shown sit to co-map with a cluster of unresolved RFLP markers on the short arm of chromosome 1. Here, the utilisation of bridging lines to produce interspecies mapping populations involving a self-compatible S. peruvianum accession (LA2157) allowed the fine mapping of sit within this cluster. Identification of a novel AO gene, within the region now known to contain the sit locus, was confirmed by analysis of the tomato whole genome shotgun sequence assembly. This novel AO protein shares 76-78% identity at the amino acid level with the previously characterised tomato AO proteins. The DNA sequence of this putative sit gene was characterised in wild type and in two allelic sit mutants (sit and sit w): changes in DNA sequence were identified in these mutant alleles that cause a truncation of exon 2 and the deletion of exon 7, respectively. These results establish the identity of the tomato sit gene and are consistent with its proposed function of encoding the ABA aldehyde oxidase apoenzyme.
Harrison, E. , Burbidge. , Okyere. P, . , Thompson. A, . J, . and Taylor, I. B, .
Plant Growth Regulation.
2010.
00().
DOI 10.1007/s10725-010-9550-1.
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