This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.
Tomato locus xyloglucan endotransglucosylase-hydrolase 4
| Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
[loading edit links...]
|
[loading...]
|
|
Links to external databases
Links to external databases
|
| Registry name: | None | [Associate registry name] |
Notes and figures (0)
Notes and figures (0)
| [Add notes, figures or images] |
Success
The display image was set successfully.
| Image | Description | Type |
|---|
Accessions and images (0)
Accessions and images (0)
| [Associate accession] |
Accession name:
Would you Like to specify an allele?
| Alleles (0) | None | [Add new Allele] |
Associated loci (19)
Associated loci (19)
| [Associate new locus] |
[loading...]
|
Associated loci - graphical view
Associated loci - graphical view
| View xyloglucan endotransglucosylase-hydrolase 4 relationships in the stand-alone network browser |
[loading...] | [Legend] [Levels] |
SolCyc links
SolCyc links
|
[loading...]
Sequence annotations
Sequence annotations
|
Genome features
Genome features
|
Genomic sequence
Genomic sequence
| unprocessed genomic sequence region underlying this gene |
>Solyc11g065600.1 SL2.50ch11:51120727..51118385 (sequence from reverse strand)
ATGAAGGGAGTTTTAGTTGCTTTTGTTTTGATTAATTTGTCAATATTGGCAAGTTGTGGGGCTCCAAGGAAGGTAATTGATGTGCCTTTTTGGAACAACTATGAACCAAGTTGGTCTAGTCACCATATTAAGTACCTTAATGGTGGTACTACGGCTGAACTTCTTCTTGACAAATCCTCTGGTAAACGAGAATATTTTTTTTGGTATCGTTTCAGTTTATTTATCTCACTTCTATATTTAGTTTATTTAAAAAAACATACTTAATTTTCTTTATTTAATTAATTGACAAGCTCTTTAATCTTATTTTTCGACATGTTAAAGATTATAATACTATAAGAAAAATATACATGACAAATAAATTGAAACTGAGCAAATATATTGAAGCACATAGGCTTTTTCATATCTTTGACTCTCGTCACTGAAAATTCTAGATCCGCTATTAATTTTTTTTTTTGAATGGTATAGCCAATAATGTACTAATTTTGAATCTTGAATGATTGAAGGAACTGGATTTCAATCAAAGAGATCGTATCTATTTGGTCATTTCAGCATGAAAATGAAGCTTGTTGGAGGAGATTCTGCTGGTGTTGTCACTGCTTTTTATGTAAGTTAACTAGTACATATTAAAAAGAAAGAATCGCAATTTTAATTAAAATACAAAGCATCTGATTTTTTTTTTTTAAAAATAATTTGTAAGTGATTATAAGAGATCATATTCATATTCTTATACTGATGAATGTTTTTATTATCGATGATTTGTCAGTTATCATCGACTAATGCTGAACACGATGAGATAGATTTCGAATTCCTCGGGAATAGAACCGGTCAGCCATACATATTGCAGACTAATGTGTTCACAGGAGGCAAAGGAGACAGAGAACAGAGGATCTATCTTTGGTTTGATCCAACCAAGGACTTTCATTCATATTCTGTTCTTTGGAACACTTACCAAATTGCGTAAGTTGATATTTTCTTTTCGTACGAAGTGTATGGTATGTAAATCTTGTTCCTGTCTTATAAGTACTGACAATAAAAATAGTATAATAACCCAACTACTTATTTATTCTTTAATCATTTTTTAATTTTGAAACTACTAAACATTAATTAATAAAGCCAGTATGATAAAACAATCATGTCAAATGTTACTTCATCGGTTTAAAAAGGGAAAATATCCAAGTACCCCCTCAACCTATGCCCGAAATTCCAGAGACACACTTATACTATACTAAGGTCCTATTATCCCCTCTGAACTTATTTTATATGTAATTTTCTACTCCTTTTTAGCCTACGTGGCACTAGTTCAGAAAAAAAGTCAATCATCGTTGGGCCCACAAGATAGTGCCATGTAAGCTAAAAAGGGGTAAAAAAATATTTATAAAATAAGTTCAGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGAGATTTCGGGCATAGATTGAGGGGGTACTTGGGCATTATCCCGTTTAAAAAAGAATGAATTTCTTTCATTTTAGTCTATTTAAAAAAGAATGATGTCTTTTTTTTTGTAACAACTTTCCACATGACATGTTTAAGGTCACAAAATTAAAGGACAATTTTATACATTTGACATAACTTTAATTTAGGACCACATGATCAAAAGTGTTCTTTATTTTCTTAAACTATGTGTCATGTCAAACTAGACCATTCTTTGTGAAATGGAGAGAACATTTTATTAATGCGTTCCAAGCCAAATATGCAAGTATAGTGAAAGTGGGGGTGGGGTGGGGTGAGGTGGGGGTGTTATAGTATTGAAATTTTTCATTAGGATGAGAGAAAATTGCGTGACTACTTACTAACACCATATTCTAATCTTCGAATCTAAGCATTTTTCTATCGAGGGTTATGTTTTCGATGAATTAGGAAATGTGTCATCCCTTGTCAGGTTTAATAATTTCTAAAAATTAACAGGATTTTTGTGGATGATGTCCCAATAAGAGTATTCAAGAATTCAAAAGACATAGGAGTGAAATTTCCGTTCAATCAGCCAATGAAGATCTACTCAAGCCTATGGAACGCGGATGATTGGGCTACAAGAGGAGGGTTAGAGAAAACTAATTGGTCTGGGGCGCCATTCATCGCTTCCTATACTTCATTCCACATTGATGGATGTGAGGCTGTCACACCACAAGAGGTACAAGTTTGTAACACCAATGGCATGAAATGGTGGGATCAAAAGGCTTTCCAAGATTTAGATGGCCCTGAATATAGAAAACTTCATAGGGTTAGACAAAATTTCACAATATATAACTATTGTACTGATAGAAAAAGGTACCCTACACTTCCTCTAGAGTGTACAAGGGATAGAGATCTTTAA
ATGAAGGGAGTTTTAGTTGCTTTTGTTTTGATTAATTTGTCAATATTGGCAAGTTGTGGGGCTCCAAGGAAGGTAATTGATGTGCCTTTTTGGAACAACTATGAACCAAGTTGGTCTAGTCACCATATTAAGTACCTTAATGGTGGTACTACGGCTGAACTTCTTCTTGACAAATCCTCTGGTAAACGAGAATATTTTTTTTGGTATCGTTTCAGTTTATTTATCTCACTTCTATATTTAGTTTATTTAAAAAAACATACTTAATTTTCTTTATTTAATTAATTGACAAGCTCTTTAATCTTATTTTTCGACATGTTAAAGATTATAATACTATAAGAAAAATATACATGACAAATAAATTGAAACTGAGCAAATATATTGAAGCACATAGGCTTTTTCATATCTTTGACTCTCGTCACTGAAAATTCTAGATCCGCTATTAATTTTTTTTTTTGAATGGTATAGCCAATAATGTACTAATTTTGAATCTTGAATGATTGAAGGAACTGGATTTCAATCAAAGAGATCGTATCTATTTGGTCATTTCAGCATGAAAATGAAGCTTGTTGGAGGAGATTCTGCTGGTGTTGTCACTGCTTTTTATGTAAGTTAACTAGTACATATTAAAAAGAAAGAATCGCAATTTTAATTAAAATACAAAGCATCTGATTTTTTTTTTTTAAAAATAATTTGTAAGTGATTATAAGAGATCATATTCATATTCTTATACTGATGAATGTTTTTATTATCGATGATTTGTCAGTTATCATCGACTAATGCTGAACACGATGAGATAGATTTCGAATTCCTCGGGAATAGAACCGGTCAGCCATACATATTGCAGACTAATGTGTTCACAGGAGGCAAAGGAGACAGAGAACAGAGGATCTATCTTTGGTTTGATCCAACCAAGGACTTTCATTCATATTCTGTTCTTTGGAACACTTACCAAATTGCGTAAGTTGATATTTTCTTTTCGTACGAAGTGTATGGTATGTAAATCTTGTTCCTGTCTTATAAGTACTGACAATAAAAATAGTATAATAACCCAACTACTTATTTATTCTTTAATCATTTTTTAATTTTGAAACTACTAAACATTAATTAATAAAGCCAGTATGATAAAACAATCATGTCAAATGTTACTTCATCGGTTTAAAAAGGGAAAATATCCAAGTACCCCCTCAACCTATGCCCGAAATTCCAGAGACACACTTATACTATACTAAGGTCCTATTATCCCCTCTGAACTTATTTTATATGTAATTTTCTACTCCTTTTTAGCCTACGTGGCACTAGTTCAGAAAAAAAGTCAATCATCGTTGGGCCCACAAGATAGTGCCATGTAAGCTAAAAAGGGGTAAAAAAATATTTATAAAATAAGTTCAGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGAGATTTCGGGCATAGATTGAGGGGGTACTTGGGCATTATCCCGTTTAAAAAAGAATGAATTTCTTTCATTTTAGTCTATTTAAAAAAGAATGATGTCTTTTTTTTTGTAACAACTTTCCACATGACATGTTTAAGGTCACAAAATTAAAGGACAATTTTATACATTTGACATAACTTTAATTTAGGACCACATGATCAAAAGTGTTCTTTATTTTCTTAAACTATGTGTCATGTCAAACTAGACCATTCTTTGTGAAATGGAGAGAACATTTTATTAATGCGTTCCAAGCCAAATATGCAAGTATAGTGAAAGTGGGGGTGGGGTGGGGTGAGGTGGGGGTGTTATAGTATTGAAATTTTTCATTAGGATGAGAGAAAATTGCGTGACTACTTACTAACACCATATTCTAATCTTCGAATCTAAGCATTTTTCTATCGAGGGTTATGTTTTCGATGAATTAGGAAATGTGTCATCCCTTGTCAGGTTTAATAATTTCTAAAAATTAACAGGATTTTTGTGGATGATGTCCCAATAAGAGTATTCAAGAATTCAAAAGACATAGGAGTGAAATTTCCGTTCAATCAGCCAATGAAGATCTACTCAAGCCTATGGAACGCGGATGATTGGGCTACAAGAGGAGGGTTAGAGAAAACTAATTGGTCTGGGGCGCCATTCATCGCTTCCTATACTTCATTCCACATTGATGGATGTGAGGCTGTCACACCACAAGAGGTACAAGTTTGTAACACCAATGGCATGAAATGGTGGGATCAAAAGGCTTTCCAAGATTTAGATGGCCCTGAATATAGAAAACTTCATAGGGTTAGACAAAATTTCACAATATATAACTATTGTACTGATAGAAAAAGGTACCCTACACTTCCTCTAGAGTGTACAAGGGATAGAGATCTTTAA
| Download sequence region |
Get flanking sequences on SL2.50ch11
|
mRNA Solyc11g065600.1.1
mRNA Solyc11g065600.1.1
|
Ontology terms
Ontology terms
| terms associated with this mRNA |
cDNA sequence
cDNA sequence
| spliced cDNA sequence, including UTRs |
>Solyc11g065600.1.1 Xyloglucan endotransglucosylase/hydrolase 6 (AHRD V1 ***- C0IRG5_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase
ATGAAGGGAGTTTTAGTTGCTTTTGTTTTGATTAATTTGTCAATATTGGCAAGTTGTGGGGCTCCAAGGAAGGTAATTGATGTGCCTTTTTGGAACAACTATGAACCAAGTTGGTCTAGTCACCATATTAAGTACCTTAATGGTGGTACTACGGCTGAACTTCTTCTTGACAAATCCTCTGGAACTGGATTTCAATCAAAGAGATCGTATCTATTTGGTCATTTCAGCATGAAAATGAAGCTTGTTGGAGGAGATTCTGCTGGTGTTGTCACTGCTTTTTATTTATCATCGACTAATGCTGAACACGATGAGATAGATTTCGAATTCCTCGGGAATAGAACCGGTCAGCCATACATATTGCAGACTAATGTGTTCACAGGAGGCAAAGGAGACAGAGAACAGAGGATCTATCTTTGGTTTGATCCAACCAAGGACTTTCATTCATATTCTGTTCTTTGGAACACTTACCAAATTGCGATTTTTGTGGATGATGTCCCAATAAGAGTATTCAAGAATTCAAAAGACATAGGAGTGAAATTTCCGTTCAATCAGCCAATGAAGATCTACTCAAGCCTATGGAACGCGGATGATTGGGCTACAAGAGGAGGGTTAGAGAAAACTAATTGGTCTGGGGCGCCATTCATCGCTTCCTATACTTCATTCCACATTGATGGATGTGAGGCTGTCACACCACAAGAGGTACAAGTTTGTAACACCAATGGCATGAAATGGTGGGATCAAAAGGCTTTCCAAGATTTAGATGGCCCTGAATATAGAAAACTTCATAGGGTTAGACAAAATTTCACAATATATAACTATTGTACTGATAGAAAAAGGTACCCTACACTTCCTCTAGAGTGTACAAGGGATAGAGATCTTTAA
ATGAAGGGAGTTTTAGTTGCTTTTGTTTTGATTAATTTGTCAATATTGGCAAGTTGTGGGGCTCCAAGGAAGGTAATTGATGTGCCTTTTTGGAACAACTATGAACCAAGTTGGTCTAGTCACCATATTAAGTACCTTAATGGTGGTACTACGGCTGAACTTCTTCTTGACAAATCCTCTGGAACTGGATTTCAATCAAAGAGATCGTATCTATTTGGTCATTTCAGCATGAAAATGAAGCTTGTTGGAGGAGATTCTGCTGGTGTTGTCACTGCTTTTTATTTATCATCGACTAATGCTGAACACGATGAGATAGATTTCGAATTCCTCGGGAATAGAACCGGTCAGCCATACATATTGCAGACTAATGTGTTCACAGGAGGCAAAGGAGACAGAGAACAGAGGATCTATCTTTGGTTTGATCCAACCAAGGACTTTCATTCATATTCTGTTCTTTGGAACACTTACCAAATTGCGATTTTTGTGGATGATGTCCCAATAAGAGTATTCAAGAATTCAAAAGACATAGGAGTGAAATTTCCGTTCAATCAGCCAATGAAGATCTACTCAAGCCTATGGAACGCGGATGATTGGGCTACAAGAGGAGGGTTAGAGAAAACTAATTGGTCTGGGGCGCCATTCATCGCTTCCTATACTTCATTCCACATTGATGGATGTGAGGCTGTCACACCACAAGAGGTACAAGTTTGTAACACCAATGGCATGAAATGGTGGGATCAAAAGGCTTTCCAAGATTTAGATGGCCCTGAATATAGAAAACTTCATAGGGTTAGACAAAATTTCACAATATATAACTATTGTACTGATAGAAAAAGGTACCCTACACTTCCTCTAGAGTGTACAAGGGATAGAGATCTTTAA
Protein sequence
Protein sequence
| translated polypeptide sequence |
>Solyc11g065600.1.1 Xyloglucan endotransglucosylase/hydrolase 6 (AHRD V1 ***- C0IRG5_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase
MKGVLVAFVLINLSILASCGAPRKVIDVPFWNNYEPSWSSHHIKYLNGGTTAELLLDKSSGTGFQSKRSYLFGHFSMKMKLVGGDSAGVVTAFYLSSTNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKDFHSYSVLWNTYQIAIFVDDVPIRVFKNSKDIGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWSGAPFIASYTSFHIDGCEAVTPQEVQVCNTNGMKWWDQKAFQDLDGPEYRKLHRVRQNFTIYNYCTDRKRYPTLPLECTRDRDL*
MKGVLVAFVLINLSILASCGAPRKVIDVPFWNNYEPSWSSHHIKYLNGGTTAELLLDKSSGTGFQSKRSYLFGHFSMKMKLVGGDSAGVVTAFYLSSTNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKDFHSYSVLWNTYQIAIFVDDVPIRVFKNSKDIGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWSGAPFIASYTSFHIDGCEAVTPQEVQVCNTNGMKWWDQKAFQDLDGPEYRKLHRVRQNFTIYNYCTDRKRYPTLPLECTRDRDL*
Gene model matches
Gene model matches
|
SGN Unigenes
SGN Unigenes
| [Associate new unigene] |
Unigene ID:
[loading...]
GenBank accessions
GenBank accessions
| [Associate new genbank sequence] |
AF186777 Lycopersicon esculentum xyloglucan endotransglycosylase (XET4) mRNA, complete cds.
| Other genome matches | None |
Literature annotations [3]
Literature annotations [3]
| [Associate publication] [Matching publications] |
A gibberellin-regulated xyloglucan endotransglycosylase gene is expressed in the endosperm cap during tomato seed germination.
Journal of experimental botany (2002)
Show / hide abstract
Show / hide abstract
Xyloglucan endotransglycosylases (XETs) modify xyloglucans, major components of primary cell walls in dicots. A cDNA encoding an XET (LeXET4) was isolated from a germinating tomato (Lycopersicon esculentum Mill.) seed cDNA library. DNA gel blot analysis showed that LeXET4 is a single-copy gene in the tomato genome. LeXET4 mRNA was strongly expressed in germinating seeds, was much less abundant in stems, and was not detected in roots, leaves or flower tissues. During germination, LeXET4 mRNA was detected in seeds within 12 h of imbibition with maximum mRNA abundance at 24 h. Tissue prints showed that LeXET4 mRNA was localized exclusively to the endosperm cap region. Expression of LeXET4 was dependent on exogenous gibberellin (GA) in GA-deficient (gib-1 mutant) tomato seeds, while abscisic acid, a seed germination inhibitor, had no effect on LeXET4 mRNA expression in wild-type seeds. LeXET4 mRNA disappeared after radicle emergence, even though degradation of the lateral endosperm cell walls continued. The temporal, spatial and hormonal regulation pattern of LeXET4 gene expression suggests that XET has a role in endosperm cap weakening, a key process regulating tomato seed germination.
Chen, F. Nonogaki, H. Bradford, KJ.
Journal of experimental botany.
2002.
53(367).
215-23.
The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: current perspectives and a new unifying nomenclature.
Plant & cell physiology (2002)
Show / hide abstract
Show / hide abstract
The polysaccharide xyloglucan is thought to play an important structural role in the primary cell wall of dicotyledons. Accordingly, there is considerable interest in understanding the biochemical basis and regulation of xyloglucan metabolism, and research over the last 16 years has identified a large family of cell wall proteins that specifically catalyze xyloglucan endohydrolysis and/or endotransglucosylation. However, a confusing and contradictory series of nomenclatures has emerged in the literature, of which xyloglucan endotransglycosylases (XETs) and endoxyloglucan transferases (EXGTs) are just two examples, to describe members of essentially the same class of genes/proteins. The completion of the first plant genome sequencing projects has revealed the full extent of this gene family and so this is an opportune time to resolve the many discrepancies in the database that include different names being assigned to the same gene. Following consultation with members of the scientific community involved in plant cell wall research, we propose a new unifying nomenclature that conveys an accurate description of the spectrum of biochemical activities that cumulative research has shown are catalyzed by these enzymes. Thus, a member of this class of genes/proteins will be referred to as a xyloglucan endotransglucosylase/hydrolase (XTH). The two known activities of XTH proteins are referred to enzymologically as xyloglucan endotransglucosylase (XET, which is hereby re-defined) activity and xyloglucan endohydrolase (XEH) activity. This review provides a summary of the biochemical and functional diversity of XTHs, including an overview of the structure and organization of the Arabidopsis XTH gene family, and highlights the potentially important roles that XTHs appear to play in numerous examples of plant growth and development.
Rose, JK. Braam, J. Fry, SC. Nishitani, K.
Plant & cell physiology.
2002.
43(12).
1421-35.
Xyloglucan endotransglucosylase/hydrolases (XTHs) during tomato fruit growth and ripening.
Journal of plant physiology (2009)
Show / hide abstract
Show / hide abstract
Depolymerization of cell wall xyloglucan has been proposed to be involved in tomato fruit softening, along with the xyloglucan modifying enzymes. Xyloglucan endotransglucosylase/hydrolases (XTHs: EC 2.4.1.207 and/or EC 3.2.1.151) have been proposed to have a dual role integrating newly secreted xyloglucan chains into an existing wall-bound xyloglucan, or restructuring the existing cell wall material by catalyzing transglucosylation between previously wall-bound xyloglucan molecules. Here, 10 tomato (Solanum lycopersicum) SlXTHs were studied and grouped into three phylogenetic groups to determine which members of each family were expressed during fruit growth and fruit ripening, and the ways in which the expression of different SlXTHs contributed to the total XET and XEH activities. Our results showed that all of the SlXTHs studied were expressed during fruit growth and ripening, and that the expression of all the SlXTHs in Group 1 was clearly related to fruit growth, as were SlXTH12 in Group 2 and SlXTH6 in Group 3-B. Only the expression of SlXTH5 and SlXTH8 from Group 3-A was clearly associated with fruit ripening, although all 10 of the different SlXTHs were expressed at the red ripe stage. Both total XET and XEH activities were higher during fruit growth, and decreased during fruit ripening. Ethylene production during tomato fruit growth was low and experienced a significant increase during fruit ripening, which was not correlated either with SlXTH expression or with XET and XEH activities. We suggest that the role of XTH during fruit development could be related to the maintenance of the structural integrity of the cell wall, and the decrease in XTHs expression, and the subsequent decrease in activity during ripening may contribute to fruit softening, with this process being regulated through different XTH genes.
Miedes, E. Lorences, EP.
Journal of plant physiology.
2009.
166(5).
489-98.
Ontology annotations (11)
Ontology annotations (11)
| [Add ontology annotations] |
[loading...]
Related views
Related views
|
- Genomic details
| User comments |
Please wait, checking for comments. (If comments do not show up, access them here)
Your Lists
Public Lists
List Contents
List Validation Report: Failed
Elements not found:
Optional: Add Missing Accessions to A List
Mismatched case
Click the Adjust Case button to align the case in the list with what is in the database.
Multiple mismatched case
Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.
List elements matching a synonym
Multiple synonym matches
Fuzzy Search Results
Synonym Search Results
Available Seedlots
Your Datasets
Public Datasets
Dataset Contents
Dataset Validation Failed
Elements not found:
Your Calendar
Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?
Add New Event
Event Info
| Attribute | Value |
|---|---|
| Project Name: | |
| Start Date: | |
| End Date: | |
| Event Type: | |
| Event Description: | |
| Event Web URL: |
Edit Event
Login
Forgot Username
If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.
Reset Password
To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.
Create New User
Working

Links to external databases
Links to external databases
