This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.
Tomato locus 1-aminocyclopropane-1-carboxylate synthase 3
| Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
[loading edit links...]
|
[loading...]
|
|
Links to external databases
Links to external databases
|
| Registry name: | None | [Associate registry name] |
Notes and figures (0)
Notes and figures (0)
| [Add notes, figures or images] |
Success
The display image was set successfully.
| Image | Description | Type |
|---|
Accessions and images (0)
Accessions and images (0)
| [Associate accession] |
Accession name:
Would you Like to specify an allele?
| Alleles (0) | None | [Add new Allele] |
Associated loci (0)
Associated loci (0)
| [Associate new locus] |
[loading...]
|
| Associated loci - graphical view | None |
SolCyc links
SolCyc links
|
[loading...]
Sequence annotations
Sequence annotations
|
Genome features
Genome features
|
Genomic sequence
Genomic sequence
| unprocessed genomic sequence region underlying this gene |
>Solyc02g091990.2 SL2.50ch02:53210555..53208754 (sequence from reverse strand)
ATGAAACTATTGTCAGAGAAAGCCACGTGTAATTCTCATGGACAAGATTCTTCATACTTTTTAGGATGGCAGGAGTACGAGAAAAATCCATACGATGAAATTCAAAATCCTAAAGGAATCATCCAGATGGGTCTAGCAGAAAATCAGGTAATTTGAAAAAAATACTTGAAACAGTTCTGTTTTTTTAAGAATCCCCATCTTCGATTGTCGGCTTTCACATTCTTTGCACTAACAATAATTTTATTTTATTTTCGTTACGCAGCTTTCATTTGATTTATTAGAGTCATGGCTAGCACAAAATCCAGACGCAGCTGGGTTTAAGAGAAATGGAGAATCAATATTTAGAGAACTTGCTCTGTTTCAAGATTATCATGGTCTTCCTGCTTTCAAAAATGTACGTATTTTTAATATATTGTTCACATGTATTATGAATACAAAAATATATTAAATATTACGTATGTGTGACATCATTTATCTTACGTTGTTATGTTTATTTTTATAATGCAGGCAATGACAAAATTCATGTCAGAAATCAGAGGAAACAGAGTAAGCTTTGATTCCAACAACCTCGTTCTTACAGCCGGTGCAACTTCCGCTAATGAGACGCTTATGTTTTGCCTAGCTAACCAAGGCGATGCTTTTCTCCTTCCTACCCCATACTATCCTGGGTACGTTCTCATCATCTATTTGATCGTAAAATTTTAAGTTAAAATTATTTTTTTTTCTTTACTGATGTTCTTATTGCATTATGTAATACAGATTCGATAGAGACCTCAAATGGAGAACTGGGGCGGAGATTGTACCAATACATTGCTCAAGTTCAAACGGATTCAGAATTACAGAATCCGCTCTTGAAGAAGCTTATCTAGACGCAAAAAAGCGCAACCTTAAAGTGAAAGGTGTTCTAGTGACCAACCCTTCAAATCCATTGGGAACAACACTAAACAGAAACGAGCTTGAACTTCTTCTTACATTCATCGACGAAAAAGGCATTCACCTCATCAGTGACGAGATCTATTCAGGGACTGTTTTTAACTCACCAGGCTTCGTTAGTGTCATGGAAGTTCTAATTGAAAAGAACTACATGAAAACCCGAGTTTGGGAACGAGTTCACATTGTTTACAGTCTCTCAAAAGATCTCGGTCTCCCCGGTTTTCGCATTGGTGCAATCTATTCCAACGATGAGATGGTTGTCTCCGCGGCCACAAAAATGTCTAGTTTCGGATTAGTCTCTTCTCAAACTCAGTACCTTCTTTCATGCATGCTCTCCGACAAAAAATTCACAAAGAAATACATCTCTGAAAATCAGAAGAGGCTAAAGAAACGACATGCAATGCTTGTTAAAGGTCTTAAAAGTGCTGGTATTAACTGCCTTGAAAGCAATGCTGGTTTGTTTTGTTGGGTAGACATGCGACATCTACTAAGTTCCAATAATTTTGACGCTGAAATGGACTTATGGAAGAAAATAGTGTACGATGTTGGCCTAAACATTTCTCCTGGATCATCATGCCATTGTACCGAACCAGGCTGGTTCCGTGTATGTTTTGCTAACATGTCCGAAGATACGTTAGACTTAGCCATGCGACGTATAAAGGATTTTGTCGAGTCCACTGCTCCCAACGCAACTAATCACCAGAATCAACAACAATCTAACGCAAATTCAAAGAAGAAGTCATTCTCCAAGTGGGTTTTTCGACTATCGTTCAATGACCGTCAAAGAGAACGATAGTCCTGCAAGTGTGAACATTCCCTTGTCCACAAATCCAGATTATTTTTTTTCTCAATATTCACATATTGAGTTC
ATGAAACTATTGTCAGAGAAAGCCACGTGTAATTCTCATGGACAAGATTCTTCATACTTTTTAGGATGGCAGGAGTACGAGAAAAATCCATACGATGAAATTCAAAATCCTAAAGGAATCATCCAGATGGGTCTAGCAGAAAATCAGGTAATTTGAAAAAAATACTTGAAACAGTTCTGTTTTTTTAAGAATCCCCATCTTCGATTGTCGGCTTTCACATTCTTTGCACTAACAATAATTTTATTTTATTTTCGTTACGCAGCTTTCATTTGATTTATTAGAGTCATGGCTAGCACAAAATCCAGACGCAGCTGGGTTTAAGAGAAATGGAGAATCAATATTTAGAGAACTTGCTCTGTTTCAAGATTATCATGGTCTTCCTGCTTTCAAAAATGTACGTATTTTTAATATATTGTTCACATGTATTATGAATACAAAAATATATTAAATATTACGTATGTGTGACATCATTTATCTTACGTTGTTATGTTTATTTTTATAATGCAGGCAATGACAAAATTCATGTCAGAAATCAGAGGAAACAGAGTAAGCTTTGATTCCAACAACCTCGTTCTTACAGCCGGTGCAACTTCCGCTAATGAGACGCTTATGTTTTGCCTAGCTAACCAAGGCGATGCTTTTCTCCTTCCTACCCCATACTATCCTGGGTACGTTCTCATCATCTATTTGATCGTAAAATTTTAAGTTAAAATTATTTTTTTTTCTTTACTGATGTTCTTATTGCATTATGTAATACAGATTCGATAGAGACCTCAAATGGAGAACTGGGGCGGAGATTGTACCAATACATTGCTCAAGTTCAAACGGATTCAGAATTACAGAATCCGCTCTTGAAGAAGCTTATCTAGACGCAAAAAAGCGCAACCTTAAAGTGAAAGGTGTTCTAGTGACCAACCCTTCAAATCCATTGGGAACAACACTAAACAGAAACGAGCTTGAACTTCTTCTTACATTCATCGACGAAAAAGGCATTCACCTCATCAGTGACGAGATCTATTCAGGGACTGTTTTTAACTCACCAGGCTTCGTTAGTGTCATGGAAGTTCTAATTGAAAAGAACTACATGAAAACCCGAGTTTGGGAACGAGTTCACATTGTTTACAGTCTCTCAAAAGATCTCGGTCTCCCCGGTTTTCGCATTGGTGCAATCTATTCCAACGATGAGATGGTTGTCTCCGCGGCCACAAAAATGTCTAGTTTCGGATTAGTCTCTTCTCAAACTCAGTACCTTCTTTCATGCATGCTCTCCGACAAAAAATTCACAAAGAAATACATCTCTGAAAATCAGAAGAGGCTAAAGAAACGACATGCAATGCTTGTTAAAGGTCTTAAAAGTGCTGGTATTAACTGCCTTGAAAGCAATGCTGGTTTGTTTTGTTGGGTAGACATGCGACATCTACTAAGTTCCAATAATTTTGACGCTGAAATGGACTTATGGAAGAAAATAGTGTACGATGTTGGCCTAAACATTTCTCCTGGATCATCATGCCATTGTACCGAACCAGGCTGGTTCCGTGTATGTTTTGCTAACATGTCCGAAGATACGTTAGACTTAGCCATGCGACGTATAAAGGATTTTGTCGAGTCCACTGCTCCCAACGCAACTAATCACCAGAATCAACAACAATCTAACGCAAATTCAAAGAAGAAGTCATTCTCCAAGTGGGTTTTTCGACTATCGTTCAATGACCGTCAAAGAGAACGATAGTCCTGCAAGTGTGAACATTCCCTTGTCCACAAATCCAGATTATTTTTTTTCTCAATATTCACATATTGAGTTC
| Download sequence region |
Get flanking sequences on SL2.50ch02
|
mRNA Solyc02g091990.2.1
mRNA Solyc02g091990.2.1
|
Ontology terms
Ontology terms
| terms associated with this mRNA |
cDNA sequence
cDNA sequence
| spliced cDNA sequence, including UTRs |
>Solyc02g091990.2.1 1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q4LDM0_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site
ATGAAACTATTGTCAGAGAAAGCCACGTGTAATTCTCATGGACAAGATTCTTCATACTTTTTAGGATGGCAGGAGTACGAGAAAAATCCATACGATGAAATTCAAAATCCTAAAGGAATCATCCAGATGGGTCTAGCAGAAAATCAGCTTTCATTTGATTTATTAGAGTCATGGCTAGCACAAAATCCAGACGCAGCTGGGTTTAAGAGAAATGGAGAATCAATATTTAGAGAACTTGCTCTGTTTCAAGATTATCATGGTCTTCCTGCTTTCAAAAATGCAATGACAAAATTCATGTCAGAAATCAGAGGAAACAGAGTAAGCTTTGATTCCAACAACCTCGTTCTTACAGCCGGTGCAACTTCCGCTAATGAGACGCTTATGTTTTGCCTAGCTAACCAAGGCGATGCTTTTCTCCTTCCTACCCCATACTATCCTGGATTCGATAGAGACCTCAAATGGAGAACTGGGGCGGAGATTGTACCAATACATTGCTCAAGTTCAAACGGATTCAGAATTACAGAATCCGCTCTTGAAGAAGCTTATCTAGACGCAAAAAAGCGCAACCTTAAAGTGAAAGGTGTTCTAGTGACCAACCCTTCAAATCCATTGGGAACAACACTAAACAGAAACGAGCTTGAACTTCTTCTTACATTCATCGACGAAAAAGGCATTCACCTCATCAGTGACGAGATCTATTCAGGGACTGTTTTTAACTCACCAGGCTTCGTTAGTGTCATGGAAGTTCTAATTGAAAAGAACTACATGAAAACCCGAGTTTGGGAACGAGTTCACATTGTTTACAGTCTCTCAAAAGATCTCGGTCTCCCCGGTTTTCGCATTGGTGCAATCTATTCCAACGATGAGATGGTTGTCTCCGCGGCCACAAAAATGTCTAGTTTCGGATTAGTCTCTTCTCAAACTCAGTACCTTCTTTCATGCATGCTCTCCGACAAAAAATTCACAAAGAAATACATCTCTGAAAATCAGAAGAGGCTAAAGAAACGACATGCAATGCTTGTTAAAGGTCTTAAAAGTGCTGGTATTAACTGCCTTGAAAGCAATGCTGGTTTGTTTTGTTGGGTAGACATGCGACATCTACTAAGTTCCAATAATTTTGACGCTGAAATGGACTTATGGAAGAAAATAGTGTACGATGTTGGCCTAAACATTTCTCCTGGATCATCATGCCATTGTACCGAACCAGGCTGGTTCCGTGTATGTTTTGCTAACATGTCCGAAGATACGTTAGACTTAGCCATGCGACGTATAAAGGATTTTGTCGAGTCCACTGCTCCCAACGCAACTAATCACCAGAATCAACAACAATCTAACGCAAATTCAAAGAAGAAGTCATTCTCCAAGTGGGTTTTTCGACTATCGTTCAATGACCGTCAAAGAGAACGATAGTCCTGCAAGTGTGAACATTCCCTTGTCCACAAATCCAGATTATTTTTTTTCTCAATATTCACATATTGAGTTC
ATGAAACTATTGTCAGAGAAAGCCACGTGTAATTCTCATGGACAAGATTCTTCATACTTTTTAGGATGGCAGGAGTACGAGAAAAATCCATACGATGAAATTCAAAATCCTAAAGGAATCATCCAGATGGGTCTAGCAGAAAATCAGCTTTCATTTGATTTATTAGAGTCATGGCTAGCACAAAATCCAGACGCAGCTGGGTTTAAGAGAAATGGAGAATCAATATTTAGAGAACTTGCTCTGTTTCAAGATTATCATGGTCTTCCTGCTTTCAAAAATGCAATGACAAAATTCATGTCAGAAATCAGAGGAAACAGAGTAAGCTTTGATTCCAACAACCTCGTTCTTACAGCCGGTGCAACTTCCGCTAATGAGACGCTTATGTTTTGCCTAGCTAACCAAGGCGATGCTTTTCTCCTTCCTACCCCATACTATCCTGGATTCGATAGAGACCTCAAATGGAGAACTGGGGCGGAGATTGTACCAATACATTGCTCAAGTTCAAACGGATTCAGAATTACAGAATCCGCTCTTGAAGAAGCTTATCTAGACGCAAAAAAGCGCAACCTTAAAGTGAAAGGTGTTCTAGTGACCAACCCTTCAAATCCATTGGGAACAACACTAAACAGAAACGAGCTTGAACTTCTTCTTACATTCATCGACGAAAAAGGCATTCACCTCATCAGTGACGAGATCTATTCAGGGACTGTTTTTAACTCACCAGGCTTCGTTAGTGTCATGGAAGTTCTAATTGAAAAGAACTACATGAAAACCCGAGTTTGGGAACGAGTTCACATTGTTTACAGTCTCTCAAAAGATCTCGGTCTCCCCGGTTTTCGCATTGGTGCAATCTATTCCAACGATGAGATGGTTGTCTCCGCGGCCACAAAAATGTCTAGTTTCGGATTAGTCTCTTCTCAAACTCAGTACCTTCTTTCATGCATGCTCTCCGACAAAAAATTCACAAAGAAATACATCTCTGAAAATCAGAAGAGGCTAAAGAAACGACATGCAATGCTTGTTAAAGGTCTTAAAAGTGCTGGTATTAACTGCCTTGAAAGCAATGCTGGTTTGTTTTGTTGGGTAGACATGCGACATCTACTAAGTTCCAATAATTTTGACGCTGAAATGGACTTATGGAAGAAAATAGTGTACGATGTTGGCCTAAACATTTCTCCTGGATCATCATGCCATTGTACCGAACCAGGCTGGTTCCGTGTATGTTTTGCTAACATGTCCGAAGATACGTTAGACTTAGCCATGCGACGTATAAAGGATTTTGTCGAGTCCACTGCTCCCAACGCAACTAATCACCAGAATCAACAACAATCTAACGCAAATTCAAAGAAGAAGTCATTCTCCAAGTGGGTTTTTCGACTATCGTTCAATGACCGTCAAAGAGAACGATAGTCCTGCAAGTGTGAACATTCCCTTGTCCACAAATCCAGATTATTTTTTTTCTCAATATTCACATATTGAGTTC
Protein sequence
Protein sequence
| translated polypeptide sequence |
>Solyc02g091990.2.1 1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q4LDM0_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site
MKLLSEKATCNSHGQDSSYFLGWQEYEKNPYDEIQNPKGIIQMGLAENQLSFDLLESWLAQNPDAAGFKRNGESIFRELALFQDYHGLPAFKNAMTKFMSEIRGNRVSFDSNNLVLTAGATSANETLMFCLANQGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFRITESALEEAYLDAKKRNLKVKGVLVTNPSNPLGTTLNRNELELLLTFIDEKGIHLISDEIYSGTVFNSPGFVSVMEVLIEKNYMKTRVWERVHIVYSLSKDLGLPGFRIGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSCMLSDKKFTKKYISENQKRLKKRHAMLVKGLKSAGINCLESNAGLFCWVDMRHLLSSNNFDAEMDLWKKIVYDVGLNISPGSSCHCTEPGWFRVCFANMSEDTLDLAMRRIKDFVESTAPNATNHQNQQQSNANSKKKSFSKWVFRLSFNDRQRER*
MKLLSEKATCNSHGQDSSYFLGWQEYEKNPYDEIQNPKGIIQMGLAENQLSFDLLESWLAQNPDAAGFKRNGESIFRELALFQDYHGLPAFKNAMTKFMSEIRGNRVSFDSNNLVLTAGATSANETLMFCLANQGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFRITESALEEAYLDAKKRNLKVKGVLVTNPSNPLGTTLNRNELELLLTFIDEKGIHLISDEIYSGTVFNSPGFVSVMEVLIEKNYMKTRVWERVHIVYSLSKDLGLPGFRIGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSCMLSDKKFTKKYISENQKRLKKRHAMLVKGLKSAGINCLESNAGLFCWVDMRHLLSSNNFDAEMDLWKKIVYDVGLNISPGSSCHCTEPGWFRVCFANMSEDTLDLAMRRIKDFVESTAPNATNHQNQQQSNANSKKKSFSKWVFRLSFNDRQRER*
Gene model matches
Gene model matches
|
SGN Unigenes
SGN Unigenes
| [Associate new unigene] |
Unigene ID:
[loading...]
GenBank accessions
GenBank accessions
| [Associate new genbank sequence] |
| Other genome matches | None |
Literature annotations [2]
Literature annotations [2]
| [Associate publication] [Matching publications] |
Differential accumulation of transcripts for four tomato 1-aminocyclopropane-1-carboxylate synthase homologs under various conditions.
Proceedings of the National Academy of Sciences of the United States of America (1992)
Show / hide abstract
Show / hide abstract
Degenerate oligonucleotide primers corresponding to conserved regions flanking the active-site domain of 1-aminocyclopropane-1-carboxylate (ACC) synthase (EC 4.4.1.14) were used for the polymerase chain reaction (PCR) to amplify DNA fragments from mRNA isolated from tomato fruit and tomato suspension cell culture. Antibodies raised against two conserved peptide sequences (TNPSNPLGTT and SLSKDLGLPGFRVG) were used to screen for positive colonies, after the PCR products were cloned into a Bluescript plasmid and expressed in Escherichia coli. Four distinct cDNA fragments encoding ACC synthase homologs were isolated. While pBTAS1 and pBTAS4 were obtained from fruit mRNA, cell culture mRNA yielded three sequences, pBTAS1, pBTAS2, and pBTAS3. Sequencing of these gene fragments revealed that pBTAS1 and pBTAS4 were identical to those full-length sequences previously reported by Van Der Straeten et al. [Van Der Straeten, D., Van Wiemeersch, L., Goodman, H. & Van Montague, M. (1990) Proc. Natl. Acad. Sci. USA 87, 4859-4863] and Olson et al. [Olson, D. C., White, J. A., Edelman, J., Harkin, R. N. & Kende, H. (1991) Proc. Natl. Acad. Sci. USA 88, 5340-5344] from tomato fruit, whereas pBTAS2 and pBTAS3 represent new sequences. Ribonuclease protection assays were used to examine the expression of these transcripts under three different conditions of enhanced ethylene production--namely, during fruit ripening, in response to mechanical wounding in fruit tissue, and auxin stimulation in vegetative tissue. Transcripts of pBTAS1 accumulated massively during ripening and wounding but only slightly in response to auxin treatment. Although pBTAS4 was associated with fruit ripening, it was unresponsive to auxin treatment in vegetative tissue. In contrast, the expression of pBTAS2 and pBTAS3 was greatly promoted in auxin-treated vegetative tissue but was absent from fruit tissue. While the expression of pBTAS2 was moderately dependent on wounding, pBTAS3 was unresponsive to wounding. These data support the view that ACC synthase is encoded by a multigene family and that the members are differentially expressed in response to developmental, environmental, and hormonal factors.
Yip, WK. Moore, T. Yang, SF.
Proceedings of the National Academy of Sciences of the United States of America.
1992.
89(6).
2475-9.
Transcriptional regulation of the ethylene response factor LeERF2 in the expression of ethylene biosynthesis genes controls ethylene production in tomato and tobacco.
Plant physiology (2009)
Show / hide abstract
Show / hide abstract
Fine-tuning of ethylene production plays an important role in developmental processes and in plant responses to stress, but very little is known about the regulation of ethylene response factor (ERF) proteins in ethylene biosynthesis genes and ethylene production. Identifying cis-acting elements and transcription factors that play a role in this process, therefore, is important. Previously, a tomato (Solanum lycopersicum [f. sp. Lycopersicon esculentum]) ERF protein, LeERF2, an allele of TERF2, was reported to confer ethylene triple response on plants. This paper reports the transcriptional modulation of LeERF2/TERF2 in ethylene biosynthesis in tomato and tobacco (Nicotiana tabacum). Using overexpressing and antisense LeERF2/TERF2 transgenic tomato, we found that LeERF2/TERF2 is an important regulator in the expression of ethylene biosynthesis genes and the production of ethylene. Expression analysis revealed that LeERF2/TERF2 is ethylene inducible, and ethylene production stimulated by ethylene was suppressed in antisense LeERF2/TERF2 transgenic tomato, indicating LeERF2/TERF2 to be a positive regulator in the feedback loop of ethylene induction. Further research showed that LeERF2/TERF2 conservatively modulates ethylene biosynthesis in tobacco and that such regulation in tobacco is associated with the elongation of the hypocotyl and insensitivity to abscisic acid and glucose during germination and seedling development. The effects on ethylene synthesis were similar to those of another ERF protein, TERF1, because TERF1 and LeERF2/TERF2 have overlapping roles in the transcriptional regulation of ethylene biosynthesis in tobacco. Biochemical analysis showed that LeERF2/TERF2 interacted with GCC box in the promoter of NtACS3 and with dehydration-responsive element in the promoter of LeACO3, resulting in transcriptional activation of the genes for ethylene biosynthesis in tomato and tobacco, which is a novel regulatory function of ERF proteins in plant ethylene biosynthesis.
Zhang, Z. Zhang, H. Quan, R. Wang, XC. Huang, R.
Plant physiology.
2009.
150(1).
365-77.
Ontology annotations (6)
Ontology annotations (6)
| [Add ontology annotations] |
[loading...]
Related views
Related views
|
- Genomic details
| User comments |
Please wait, checking for comments. (If comments do not show up, access them here)
Your Lists
Public Lists
List Contents
List Validation Report: Failed
Elements not found:
Optional: Add Missing Accessions to A List
Mismatched case
Click the Adjust Case button to align the case in the list with what is in the database.
Multiple mismatched case
Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.
List elements matching a synonym
Multiple synonym matches
Fuzzy Search Results
Synonym Search Results
Available Seedlots
Your Datasets
Public Datasets
Dataset Contents
Dataset Validation Failed
Elements not found:
Your Calendar
Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?
Add New Event
Event Info
| Attribute | Value |
|---|---|
| Project Name: | |
| Start Date: | |
| End Date: | |
| Event Type: | |
| Event Description: | |
| Event Web URL: |
Edit Event
Login
Forgot Username
If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.
Reset Password
To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.
Create New User
Working

Links to external databases
Links to external databases
