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Tomato locus CONSTANS interacting protein 6
| Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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Links to external databases
Links to external databases
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| Registry name: | None | [Associate registry name] |
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Notes and figures (0)
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Accessions and images (0)
Accessions and images (0)
| [Associate accession] |
Accession name:
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| Alleles (0) | None | [Add new Allele] |
Associated loci (0)
Associated loci (0)
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| Associated loci - graphical view | None |
SolCyc links
SolCyc links
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Sequence annotations
Sequence annotations
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Genome features
Genome features
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Genomic sequence
Genomic sequence
| unprocessed genomic sequence region underlying this gene |
>Solyc07g047780.2 SL2.50ch07:59000380..58995343 (sequence from reverse strand)
GGTTGTAATATATCAGTTATCAAGCTTCATTAAATATGCTGCCTCCACGCCCCAGCGGGTTGCCTCCGTCCTTATTTCTTTCCTCTTCAGACACCAGAGCATCAACTGGTAATCATGACCCTGGAATGAACTCTGATCAGAATCGTGAATCGCCTGCTGAGAGTGCTAATTCAAGAGATACGTGGCCTGTAATTGATGCTGCTACTCAAGTGAAGCTTGAGAATCAGAAAGCTGAGGATGGTTATTATGAACAGTCTGTGACTCACAGGCCTGCTAGTGCAAATAAGGTTTCTCTTCTTGATATTGCTAGAGAACAAGTGGATATAATATCTGAAAAAATGTATTTGCTCCCCAATGAGTATTTAGAAGAGCTAAAAGGTAGGCTTCGAGGGATGCTTGAAGGGAACGGTGGTCCTCAGCAAAGAGATGAACTTTTGTTTTTACAGAGGCTTGTTCAGACTAGGTCTGATTTGACTGCTAATACATTGATTAAAGCTCATCGAGTTCAGCTGGAAATTCTTGTCGCTATTAATAGTGGAATTCAGTTTTTCCTGCATCATAGTATGAATCTTTCTCAGACTTGCCTGATTGAGGTTTTTGTATACAAAAGATGTCGGAATATAGCATGCCAAAGCCAGTTGCCTGCAGAAGATTGCCACTGTGAGATATGCACCAACCGAAAGGGATTCTGCAGCCTTTGCATGTGTGTAATCTGTAACAAGTTTGATTTTGAAGTGAATACATGTCGGTGGATTGGTTGCGACTCCTGTGCTCATTGGACTCACACGGACTGCGCAATTCGTGATAAACAAATTGGAACAGGTCCTTCTTCTGTGAATGGGCTGGGGTCTGCTGAAATGCAGTTCAGGTGTAGAGCATGCAATCGCACTTCTGAGCTTTTTGGTTGGGTGAAAGATGTATTCCAACAATGTGCACCTACCTGGAATGGGGAATCATTGATAAGAGAACTAACTGTTGTAAGTAAGATCTTTCGACTGAGTGAGAACACAAGAGGGAGGCAGCTGTTTTGGAAGTCTGAGGAGCTCATAGAAAAACTAAAGGGTGGAGTGGCAGAGACAACAGCTTGCAGGATTATATTAACTTTTCTCCAAGGTAGGTCTCGTATTTTGTACTCTATTGCTCCGGCACTTTGTAGAAATGTATTCATAAAAAGGTAGAACCCATCACGTGGTTGACATTGAAACTAAAAAGCATTTGCTTCTCCTATGATAAGTTAGAAACAACTACAAAAATCTCAGACATGAAGAAAACTTCCCTTAAAACGATTTACTTTCAATCATTAGGGAATTGTGAGACCCTAAATCATAGAAGTGGTGCTTGATGGTAGTTTAATGCTGTCACGTGGATTTTTTTGAAACTTGAGCTGTGCAAGTCTTCATTTTTCCTCAATGTAAATGTACCCTGCATCTTCTTGGTAGCATATTTGCCCCCATAAGTATCCCTCAAAAGCATTCAAAACTGTTAAAATATGTTGAGGCGTAATTTCATTGACTGATATGTTTCTGAGCTCAAGCTGTATCAATATTTTCATCTTTAGTCTAGGTAACATGATTTTGAGCGTATAATCGTGGAATCAAATTAGCTCTTGCTCATGTTAAGAGGTTGGCAGGTATTAAAGAAAGGTTTGGTACATAAAAGATTCCTTGCATGCTCCTCCTACATTTCTCACATCATTTTTTTCTGTGCATCTTACTTCCCTTTTTAGTCTGTTTCAAAAAGAATGTCTCTTTCCATTTCTGAAAACTCTTTAATTCTAACTTTTCACATGACGTGCTCAAGACTACAATACTAAAGGGCATCTTGTACATTCTCCATATCTTTAATTTTTTAAGACCACAAAATGTATTTGTTCTTTACTTACTTAATCTCCGTGCCAAGTCAAAATCAACCAATCAAATTGAAACGGAGGGATTTTTCTATGGAAAATGTCATAAAAAAAATTCTATGGAGAAAATTAACTTTTATCAATAGAGAGAAGAAACAATACAAACCTCCTGGTGTATCTCTGAGATCAGCATGTCATGATGTTGAGGTCCTTTACAACTTTGAGAGATATAAGAAATAAGAGGCATCGCTTTCTAGATTTCAGTGTTTCAGATGAATATAGTTTTCATTTGATCGCAGCAAAAGCGAGAGTATCCTGCGTGCCAAAGAAGACGACGGATTCCTGTCACATGTTCCAATCCAAGTTCAATAGAAGTCTAAGCTAAGTTGCTCGGACTCGGGTGTCCGACACGGGTGCGGATCTAGAGGTTAGATCCTTCATGATCTAATTTTTAAGATCCGGGGATATGGATCCATGTATGGATACGGGTGCGGCGAATCACCTAAAAATAATTAAAATATCTAAAAATGGAGTTATAAAACCTAAACTATGAGACCCTTCGGGTGGCCTAGTGGTTTGGGCTTGTGACTTTCATATTGGAGGTCTCAAGTTTGAAACACCTTGCCAGCGAAAGCAGGGAGTTGCCTTCTGGGTCGAGCTTGTTGCACCGGGCTTGCCTAGTGCAGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATTGGAGGGGGGTTTTACCTTGTGCGCACCCAATGGGTAGCTGCTGTAGGTTTCCCTTGTCATAAAAAAAAACAAACTAAATTATGAGATATTATGTGGAGAAGTTGAGCAGAATCTTGGAAGGAGATTTAAAGGAAGAGTAAAATAAAAATTTCTATAGGATCATTAAAATTGTCCAGACTTTCCCCATCGATTTTGGTCAAAGTACCCAAAATCCGTTGACCAAGTCGGACACGGAGTCCACACCCATGTCGTGTCGACACGGGTTCCGGCACCAAAACTGAAGAGTCCGAGCGACTTAGAGTCTTAAGTGTTTAGCAGATGAGGACCACACTTGTGTTTGATTGTGAAATATCTAAAATTAAATGACTAAATTTGCTCTCTCTTAATCTATGTACTTTTACAGTTTATAATATCCTGACTTTAGATTTGTGGTTAACTCCTCTTCAGACTTCAAGCATCCTTCTTCCGTCTGTTTTCTTCTCATCTAGTATCTGCTCTTATTTTCTTCAGCTTCAGTATTGTAAATTTAGATATGTCCTTGAATATGTATTTAGTAATCCACATCTCTGCTCAGTATCAACCATCCCTTGTGTGAGCTTCCCTTGACTGAACTCTAGTTTTGGTGTAATAGATGAGGCAAACAAAATTTTACACTTCACAATAGGTTAAGGAGAGAGCAATCTGATGTGTGACTTGTTTTTCCTTTTTATTTTTGATTTGGGTGATTAATGTGTAGGTGTGTATTGGCTTGAAAAATATGATTAACCGAGATGTTAAGCTGTTGTAGATTCAAAAGATATTCCTTTAAAAAGTTCCTGGGGGAACTAAAAAAAGAATTATATCATCCCTAAAAAGCAACTGCTGCCTCCTTGCCACCTATGGTTCATGCTTATCGCTTTTTTTTTATTTTATTCGTGGTGATCTCAAACTCCAATTCCCCTCGCAACTCTGTCATCAGTCCTCACTAGTCACTCTGTCCAATTTATCTCTTTCTTAGGTTCTCTTTTCAAAAAATTAGTGTGAGAAACTTTCCTGCAAAAAGGCCAAAATAAGTGATTTACATTTGTACAAGTAGAAATGTGTGTCGCCATCAACATCTTGCCTAAGAGTTTGAAGATTCTATTTTCCACCTCATTAGGATTACCTTCTCCTGCCTCCTTTACTGCCAGTTCCTTTTTTCCCTCCTCAGTACCGAAGTCCCTATGAGTGATTAGTTCCCCGTTGGAGTCTCAAGTCTTTGAGCTTCTACAATATCCAACTTCCTGTTTCATGATTTACATGCATCCCATTTTCCAAGGCTGAATAGGTACAGCTTGGTCTTTATTTGTAGGAACAAGAGAGAATATTTTTGGGATTCCGTCTTTTTCCCTGTCATATATTTTCCTGCCAAGTGTTGGTGGAAACGGGGGAAAGATGACCAGATTTAATACATGCATGTAGACAATTCACAAGTGTGGAAAATGCTGCATGCGAGGGCATAAATAGAAGGTTTATGTTGGAGGCCTCTTTTGTTTCTCTCTTTCCATTGGATAAGACGAATTCATTCTTCTCGAATGGATAGCCCGTATGACTCTCATCTTTTATATTTTCTCAGTTACTCATCGTGCTGTCACCCTGCCTGATCTTAAAATGCTGAAACGCGAATAGACCTAAAATGCATGACATAATTTCTTCTCGTCTCTTTGTTTCTGAATTATTCTGAATATCATCAATTTATGTGCGCATTTTTATGAAGAGCTTGAGATGGACTCATCAAGGAGCTCTGAGGCTGGAAATAAAGAAAGGATGATTCCACCCCAGGAGGCATGCAACCGAATTGCTGCAGTGGTACAAGAAGCAGTGCAGACAATGGGAGTAGTGGCTGATGAAAAATTGAGGATGCTAAAGAAAGCTCGCCAAGCTCTCGAGACATGTGATCATGAACTGGAGGAAAAAGCTAAAGAAGTTTCAGAACTTAAACTGGAGAGGCAACGAAAAAGACTACAAATTGATGAATTAGAGAGCATTGCTAGGCTTAAAGAAGCAGAAGCAGATATGTTCCAGCTCAAGGCAGATGAGGCAAGACGAGAAGCTGACAGGTTGCAGAGGATTGCTCTTGCAAAATCAGGGAAATCAGAAGAAGATTATGCCAGTAGTTACCTTAAACAACGTCTTAGCGAGGCTGAAGCTGAGAAACAATTCCTTTTCGAGAAGATTAAACTTCAAGATCAGAGTTCTCGTTCATCACAAGGCAATGACATCGGTGACAGTTCACAAGAACTTTACTCTAAAATACAAGAGATCCTAAAGAGTGTGTAGAAATCCCAGTAAAGCCAGAGACAACCAGCCAAATGAACATCATTGTAAGTTGCCTGATCATTGTTCATGGTTTGTGTCATTTTAACTTAATACTTTAAATAATACATTACCTAAAACCTTGTATAATTGATTAATTTTGCTTTTAAAGTACCACTGTATTGTTGATTTGATC
GGTTGTAATATATCAGTTATCAAGCTTCATTAAATATGCTGCCTCCACGCCCCAGCGGGTTGCCTCCGTCCTTATTTCTTTCCTCTTCAGACACCAGAGCATCAACTGGTAATCATGACCCTGGAATGAACTCTGATCAGAATCGTGAATCGCCTGCTGAGAGTGCTAATTCAAGAGATACGTGGCCTGTAATTGATGCTGCTACTCAAGTGAAGCTTGAGAATCAGAAAGCTGAGGATGGTTATTATGAACAGTCTGTGACTCACAGGCCTGCTAGTGCAAATAAGGTTTCTCTTCTTGATATTGCTAGAGAACAAGTGGATATAATATCTGAAAAAATGTATTTGCTCCCCAATGAGTATTTAGAAGAGCTAAAAGGTAGGCTTCGAGGGATGCTTGAAGGGAACGGTGGTCCTCAGCAAAGAGATGAACTTTTGTTTTTACAGAGGCTTGTTCAGACTAGGTCTGATTTGACTGCTAATACATTGATTAAAGCTCATCGAGTTCAGCTGGAAATTCTTGTCGCTATTAATAGTGGAATTCAGTTTTTCCTGCATCATAGTATGAATCTTTCTCAGACTTGCCTGATTGAGGTTTTTGTATACAAAAGATGTCGGAATATAGCATGCCAAAGCCAGTTGCCTGCAGAAGATTGCCACTGTGAGATATGCACCAACCGAAAGGGATTCTGCAGCCTTTGCATGTGTGTAATCTGTAACAAGTTTGATTTTGAAGTGAATACATGTCGGTGGATTGGTTGCGACTCCTGTGCTCATTGGACTCACACGGACTGCGCAATTCGTGATAAACAAATTGGAACAGGTCCTTCTTCTGTGAATGGGCTGGGGTCTGCTGAAATGCAGTTCAGGTGTAGAGCATGCAATCGCACTTCTGAGCTTTTTGGTTGGGTGAAAGATGTATTCCAACAATGTGCACCTACCTGGAATGGGGAATCATTGATAAGAGAACTAACTGTTGTAAGTAAGATCTTTCGACTGAGTGAGAACACAAGAGGGAGGCAGCTGTTTTGGAAGTCTGAGGAGCTCATAGAAAAACTAAAGGGTGGAGTGGCAGAGACAACAGCTTGCAGGATTATATTAACTTTTCTCCAAGGTAGGTCTCGTATTTTGTACTCTATTGCTCCGGCACTTTGTAGAAATGTATTCATAAAAAGGTAGAACCCATCACGTGGTTGACATTGAAACTAAAAAGCATTTGCTTCTCCTATGATAAGTTAGAAACAACTACAAAAATCTCAGACATGAAGAAAACTTCCCTTAAAACGATTTACTTTCAATCATTAGGGAATTGTGAGACCCTAAATCATAGAAGTGGTGCTTGATGGTAGTTTAATGCTGTCACGTGGATTTTTTTGAAACTTGAGCTGTGCAAGTCTTCATTTTTCCTCAATGTAAATGTACCCTGCATCTTCTTGGTAGCATATTTGCCCCCATAAGTATCCCTCAAAAGCATTCAAAACTGTTAAAATATGTTGAGGCGTAATTTCATTGACTGATATGTTTCTGAGCTCAAGCTGTATCAATATTTTCATCTTTAGTCTAGGTAACATGATTTTGAGCGTATAATCGTGGAATCAAATTAGCTCTTGCTCATGTTAAGAGGTTGGCAGGTATTAAAGAAAGGTTTGGTACATAAAAGATTCCTTGCATGCTCCTCCTACATTTCTCACATCATTTTTTTCTGTGCATCTTACTTCCCTTTTTAGTCTGTTTCAAAAAGAATGTCTCTTTCCATTTCTGAAAACTCTTTAATTCTAACTTTTCACATGACGTGCTCAAGACTACAATACTAAAGGGCATCTTGTACATTCTCCATATCTTTAATTTTTTAAGACCACAAAATGTATTTGTTCTTTACTTACTTAATCTCCGTGCCAAGTCAAAATCAACCAATCAAATTGAAACGGAGGGATTTTTCTATGGAAAATGTCATAAAAAAAATTCTATGGAGAAAATTAACTTTTATCAATAGAGAGAAGAAACAATACAAACCTCCTGGTGTATCTCTGAGATCAGCATGTCATGATGTTGAGGTCCTTTACAACTTTGAGAGATATAAGAAATAAGAGGCATCGCTTTCTAGATTTCAGTGTTTCAGATGAATATAGTTTTCATTTGATCGCAGCAAAAGCGAGAGTATCCTGCGTGCCAAAGAAGACGACGGATTCCTGTCACATGTTCCAATCCAAGTTCAATAGAAGTCTAAGCTAAGTTGCTCGGACTCGGGTGTCCGACACGGGTGCGGATCTAGAGGTTAGATCCTTCATGATCTAATTTTTAAGATCCGGGGATATGGATCCATGTATGGATACGGGTGCGGCGAATCACCTAAAAATAATTAAAATATCTAAAAATGGAGTTATAAAACCTAAACTATGAGACCCTTCGGGTGGCCTAGTGGTTTGGGCTTGTGACTTTCATATTGGAGGTCTCAAGTTTGAAACACCTTGCCAGCGAAAGCAGGGAGTTGCCTTCTGGGTCGAGCTTGTTGCACCGGGCTTGCCTAGTGCAGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATTGGAGGGGGGTTTTACCTTGTGCGCACCCAATGGGTAGCTGCTGTAGGTTTCCCTTGTCATAAAAAAAAACAAACTAAATTATGAGATATTATGTGGAGAAGTTGAGCAGAATCTTGGAAGGAGATTTAAAGGAAGAGTAAAATAAAAATTTCTATAGGATCATTAAAATTGTCCAGACTTTCCCCATCGATTTTGGTCAAAGTACCCAAAATCCGTTGACCAAGTCGGACACGGAGTCCACACCCATGTCGTGTCGACACGGGTTCCGGCACCAAAACTGAAGAGTCCGAGCGACTTAGAGTCTTAAGTGTTTAGCAGATGAGGACCACACTTGTGTTTGATTGTGAAATATCTAAAATTAAATGACTAAATTTGCTCTCTCTTAATCTATGTACTTTTACAGTTTATAATATCCTGACTTTAGATTTGTGGTTAACTCCTCTTCAGACTTCAAGCATCCTTCTTCCGTCTGTTTTCTTCTCATCTAGTATCTGCTCTTATTTTCTTCAGCTTCAGTATTGTAAATTTAGATATGTCCTTGAATATGTATTTAGTAATCCACATCTCTGCTCAGTATCAACCATCCCTTGTGTGAGCTTCCCTTGACTGAACTCTAGTTTTGGTGTAATAGATGAGGCAAACAAAATTTTACACTTCACAATAGGTTAAGGAGAGAGCAATCTGATGTGTGACTTGTTTTTCCTTTTTATTTTTGATTTGGGTGATTAATGTGTAGGTGTGTATTGGCTTGAAAAATATGATTAACCGAGATGTTAAGCTGTTGTAGATTCAAAAGATATTCCTTTAAAAAGTTCCTGGGGGAACTAAAAAAAGAATTATATCATCCCTAAAAAGCAACTGCTGCCTCCTTGCCACCTATGGTTCATGCTTATCGCTTTTTTTTTATTTTATTCGTGGTGATCTCAAACTCCAATTCCCCTCGCAACTCTGTCATCAGTCCTCACTAGTCACTCTGTCCAATTTATCTCTTTCTTAGGTTCTCTTTTCAAAAAATTAGTGTGAGAAACTTTCCTGCAAAAAGGCCAAAATAAGTGATTTACATTTGTACAAGTAGAAATGTGTGTCGCCATCAACATCTTGCCTAAGAGTTTGAAGATTCTATTTTCCACCTCATTAGGATTACCTTCTCCTGCCTCCTTTACTGCCAGTTCCTTTTTTCCCTCCTCAGTACCGAAGTCCCTATGAGTGATTAGTTCCCCGTTGGAGTCTCAAGTCTTTGAGCTTCTACAATATCCAACTTCCTGTTTCATGATTTACATGCATCCCATTTTCCAAGGCTGAATAGGTACAGCTTGGTCTTTATTTGTAGGAACAAGAGAGAATATTTTTGGGATTCCGTCTTTTTCCCTGTCATATATTTTCCTGCCAAGTGTTGGTGGAAACGGGGGAAAGATGACCAGATTTAATACATGCATGTAGACAATTCACAAGTGTGGAAAATGCTGCATGCGAGGGCATAAATAGAAGGTTTATGTTGGAGGCCTCTTTTGTTTCTCTCTTTCCATTGGATAAGACGAATTCATTCTTCTCGAATGGATAGCCCGTATGACTCTCATCTTTTATATTTTCTCAGTTACTCATCGTGCTGTCACCCTGCCTGATCTTAAAATGCTGAAACGCGAATAGACCTAAAATGCATGACATAATTTCTTCTCGTCTCTTTGTTTCTGAATTATTCTGAATATCATCAATTTATGTGCGCATTTTTATGAAGAGCTTGAGATGGACTCATCAAGGAGCTCTGAGGCTGGAAATAAAGAAAGGATGATTCCACCCCAGGAGGCATGCAACCGAATTGCTGCAGTGGTACAAGAAGCAGTGCAGACAATGGGAGTAGTGGCTGATGAAAAATTGAGGATGCTAAAGAAAGCTCGCCAAGCTCTCGAGACATGTGATCATGAACTGGAGGAAAAAGCTAAAGAAGTTTCAGAACTTAAACTGGAGAGGCAACGAAAAAGACTACAAATTGATGAATTAGAGAGCATTGCTAGGCTTAAAGAAGCAGAAGCAGATATGTTCCAGCTCAAGGCAGATGAGGCAAGACGAGAAGCTGACAGGTTGCAGAGGATTGCTCTTGCAAAATCAGGGAAATCAGAAGAAGATTATGCCAGTAGTTACCTTAAACAACGTCTTAGCGAGGCTGAAGCTGAGAAACAATTCCTTTTCGAGAAGATTAAACTTCAAGATCAGAGTTCTCGTTCATCACAAGGCAATGACATCGGTGACAGTTCACAAGAACTTTACTCTAAAATACAAGAGATCCTAAAGAGTGTGTAGAAATCCCAGTAAAGCCAGAGACAACCAGCCAAATGAACATCATTGTAAGTTGCCTGATCATTGTTCATGGTTTGTGTCATTTTAACTTAATACTTTAAATAATACATTACCTAAAACCTTGTATAATTGATTAATTTTGCTTTTAAAGTACCACTGTATTGTTGATTTGATC
| Download sequence region |
Get flanking sequences on SL2.50ch07
|
mRNA Solyc07g047780.2.1
mRNA Solyc07g047780.2.1
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Ontology terms
Ontology terms
| terms associated with this mRNA |
cDNA sequence
cDNA sequence
| spliced cDNA sequence, including UTRs |
>Solyc07g047780.2.1 CONSTANS interacting protein 6 (Fragment) (AHRD V1 **-- Q2VY13_SOLLC); contains Interpro domain(s) IPR004082 Protein of unknown function DUF1423, plant
GGTTGTAATATATCAGTTATCAAGCTTCATTAAATATGCTGCCTCCACGCCCCAGCGGGTTGCCTCCGTCCTTATTTCTTTCCTCTTCAGACACCAGAGCATCAACTGGTAATCATGACCCTGGAATGAACTCTGATCAGAATCGTGAATCGCCTGCTGAGAGTGCTAATTCAAGAGATACGTGGCCTGTAATTGATGCTGCTACTCAAGTGAAGCTTGAGAATCAGAAAGCTGAGGATGGTTATTATGAACAGTCTGTGACTCACAGGCCTGCTAGTGCAAATAAGGTTTCTCTTCTTGATATTGCTAGAGAACAAGTGGATATAATATCTGAAAAAATGTATTTGCTCCCCAATGAGTATTTAGAAGAGCTAAAAGGTAGGCTTCGAGGGATGCTTGAAGGGAACGGTGGTCCTCAGCAAAGAGATGAACTTTTGTTTTTACAGAGGCTTGTTCAGACTAGGTCTGATTTGACTGCTAATACATTGATTAAAGCTCATCGAGTTCAGCTGGAAATTCTTGTCGCTATTAATAGTGGAATTCAGTTTTTCCTGCATCATAGTATGAATCTTTCTCAGACTTGCCTGATTGAGGTTTTTGTATACAAAAGATGTCGGAATATAGCATGCCAAAGCCAGTTGCCTGCAGAAGATTGCCACTGTGAGATATGCACCAACCGAAAGGGATTCTGCAGCCTTTGCATGTGTGTAATCTGTAACAAGTTTGATTTTGAAGTGAATACATGTCGGTGGATTGGTTGCGACTCCTGTGCTCATTGGACTCACACGGACTGCGCAATTCGTGATAAACAAATTGGAACAGGTCCTTCTTCTGTGAATGGGCTGGGGTCTGCTGAAATGCAGTTCAGGTGTAGAGCATGCAATCGCACTTCTGAGCTTTTTGGTTGGGTGAAAGATGTATTCCAACAATGTGCACCTACCTGGAATGGGGAATCATTGATAAGAGAACTAACTGTTGTAAGTAAGATCTTTCGACTGAGTGAGAACACAAGAGGGAGGCAGCTGTTTTGGAAGTCTGAGGAGCTCATAGAAAAACTAAAGGGTGGAGTGGCAGAGACAACAGCTTGCAGGATTATATTAACTTTTCTCCAAGAGCTTGAGATGGACTCATCAAGGAGCTCTGAGGCTGGAAATAAAGAAAGGATGATTCCACCCCAGGAGGCATGCAACCGAATTGCTGCAGTGGTACAAGAAGCAGTGCAGACAATGGGAGTAGTGGCTGATGAAAAATTGAGGATGCTAAAGAAAGCTCGCCAAGCTCTCGAGACATGTGATCATGAACTGGAGGAAAAAGCTAAAGAAGTTTCAGAACTTAAACTGGAGAGGCAACGAAAAAGACTACAAATTGATGAATTAGAGAGCATTGCTAGGCTTAAAGAAGCAGAAGCAGATATGTTCCAGCTCAAGGCAGATGAGGCAAGACGAGAAGCTGACAGGTTGCAGAGGATTGCTCTTGCAAAATCAGGGAAATCAGAAGAAGATTATGCCAGTAGTTACCTTAAACAACGTCTTAGCGAGGCTGAAGCTGAGAAACAATTCCTTTTCGAGAAGATTAAACTTCAAGATCAGAGTTCTCGTTCATCACAAGGCAATGACATCGGTGACAGTTCACAAGAACTTTACTCTAAAATACAAGAGATCCTAAAGAGTGTGTAGAAATCCCAGTAAAGCCAGAGACAACCAGCCAAATGAACATCATTGTAAGTTGCCTGATCATTGTTCATGGTTTGTGTCATTTTAACTTAATACTTTAAATAATACATTACCTAAAACCTTGTATAATTGATTAATTTTGCTTTTAAAGTACCACTGTATTGTTGATTTGATC
GGTTGTAATATATCAGTTATCAAGCTTCATTAAATATGCTGCCTCCACGCCCCAGCGGGTTGCCTCCGTCCTTATTTCTTTCCTCTTCAGACACCAGAGCATCAACTGGTAATCATGACCCTGGAATGAACTCTGATCAGAATCGTGAATCGCCTGCTGAGAGTGCTAATTCAAGAGATACGTGGCCTGTAATTGATGCTGCTACTCAAGTGAAGCTTGAGAATCAGAAAGCTGAGGATGGTTATTATGAACAGTCTGTGACTCACAGGCCTGCTAGTGCAAATAAGGTTTCTCTTCTTGATATTGCTAGAGAACAAGTGGATATAATATCTGAAAAAATGTATTTGCTCCCCAATGAGTATTTAGAAGAGCTAAAAGGTAGGCTTCGAGGGATGCTTGAAGGGAACGGTGGTCCTCAGCAAAGAGATGAACTTTTGTTTTTACAGAGGCTTGTTCAGACTAGGTCTGATTTGACTGCTAATACATTGATTAAAGCTCATCGAGTTCAGCTGGAAATTCTTGTCGCTATTAATAGTGGAATTCAGTTTTTCCTGCATCATAGTATGAATCTTTCTCAGACTTGCCTGATTGAGGTTTTTGTATACAAAAGATGTCGGAATATAGCATGCCAAAGCCAGTTGCCTGCAGAAGATTGCCACTGTGAGATATGCACCAACCGAAAGGGATTCTGCAGCCTTTGCATGTGTGTAATCTGTAACAAGTTTGATTTTGAAGTGAATACATGTCGGTGGATTGGTTGCGACTCCTGTGCTCATTGGACTCACACGGACTGCGCAATTCGTGATAAACAAATTGGAACAGGTCCTTCTTCTGTGAATGGGCTGGGGTCTGCTGAAATGCAGTTCAGGTGTAGAGCATGCAATCGCACTTCTGAGCTTTTTGGTTGGGTGAAAGATGTATTCCAACAATGTGCACCTACCTGGAATGGGGAATCATTGATAAGAGAACTAACTGTTGTAAGTAAGATCTTTCGACTGAGTGAGAACACAAGAGGGAGGCAGCTGTTTTGGAAGTCTGAGGAGCTCATAGAAAAACTAAAGGGTGGAGTGGCAGAGACAACAGCTTGCAGGATTATATTAACTTTTCTCCAAGAGCTTGAGATGGACTCATCAAGGAGCTCTGAGGCTGGAAATAAAGAAAGGATGATTCCACCCCAGGAGGCATGCAACCGAATTGCTGCAGTGGTACAAGAAGCAGTGCAGACAATGGGAGTAGTGGCTGATGAAAAATTGAGGATGCTAAAGAAAGCTCGCCAAGCTCTCGAGACATGTGATCATGAACTGGAGGAAAAAGCTAAAGAAGTTTCAGAACTTAAACTGGAGAGGCAACGAAAAAGACTACAAATTGATGAATTAGAGAGCATTGCTAGGCTTAAAGAAGCAGAAGCAGATATGTTCCAGCTCAAGGCAGATGAGGCAAGACGAGAAGCTGACAGGTTGCAGAGGATTGCTCTTGCAAAATCAGGGAAATCAGAAGAAGATTATGCCAGTAGTTACCTTAAACAACGTCTTAGCGAGGCTGAAGCTGAGAAACAATTCCTTTTCGAGAAGATTAAACTTCAAGATCAGAGTTCTCGTTCATCACAAGGCAATGACATCGGTGACAGTTCACAAGAACTTTACTCTAAAATACAAGAGATCCTAAAGAGTGTGTAGAAATCCCAGTAAAGCCAGAGACAACCAGCCAAATGAACATCATTGTAAGTTGCCTGATCATTGTTCATGGTTTGTGTCATTTTAACTTAATACTTTAAATAATACATTACCTAAAACCTTGTATAATTGATTAATTTTGCTTTTAAAGTACCACTGTATTGTTGATTTGATC
Protein sequence
Protein sequence
| translated polypeptide sequence |
>Solyc07g047780.2.1 CONSTANS interacting protein 6 (Fragment) (AHRD V1 **-- Q2VY13_SOLLC); contains Interpro domain(s) IPR004082 Protein of unknown function DUF1423, plant
MLPPRPSGLPPSLFLSSSDTRASTGNHDPGMNSDQNRESPAESANSRDTWPVIDAATQVKLENQKAEDGYYEQSVTHRPASANKVSLLDIAREQVDIISEKMYLLPNEYLEELKGRLRGMLEGNGGPQQRDELLFLQRLVQTRSDLTANTLIKAHRVQLEILVAINSGIQFFLHHSMNLSQTCLIEVFVYKRCRNIACQSQLPAEDCHCEICTNRKGFCSLCMCVICNKFDFEVNTCRWIGCDSCAHWTHTDCAIRDKQIGTGPSSVNGLGSAEMQFRCRACNRTSELFGWVKDVFQQCAPTWNGESLIRELTVVSKIFRLSENTRGRQLFWKSEELIEKLKGGVAETTACRIILTFLQELEMDSSRSSEAGNKERMIPPQEACNRIAAVVQEAVQTMGVVADEKLRMLKKARQALETCDHELEEKAKEVSELKLERQRKRLQIDELESIARLKEAEADMFQLKADEARREADRLQRIALAKSGKSEEDYASSYLKQRLSEAEAEKQFLFEKIKLQDQSSRSSQGNDIGDSSQELYSKIQEILKSV*
MLPPRPSGLPPSLFLSSSDTRASTGNHDPGMNSDQNRESPAESANSRDTWPVIDAATQVKLENQKAEDGYYEQSVTHRPASANKVSLLDIAREQVDIISEKMYLLPNEYLEELKGRLRGMLEGNGGPQQRDELLFLQRLVQTRSDLTANTLIKAHRVQLEILVAINSGIQFFLHHSMNLSQTCLIEVFVYKRCRNIACQSQLPAEDCHCEICTNRKGFCSLCMCVICNKFDFEVNTCRWIGCDSCAHWTHTDCAIRDKQIGTGPSSVNGLGSAEMQFRCRACNRTSELFGWVKDVFQQCAPTWNGESLIRELTVVSKIFRLSENTRGRQLFWKSEELIEKLKGGVAETTACRIILTFLQELEMDSSRSSEAGNKERMIPPQEACNRIAAVVQEAVQTMGVVADEKLRMLKKARQALETCDHELEEKAKEVSELKLERQRKRLQIDELESIARLKEAEADMFQLKADEARREADRLQRIALAKSGKSEEDYASSYLKQRLSEAEAEKQFLFEKIKLQDQSSRSSQGNDIGDSSQELYSKIQEILKSV*
Gene model matches
Gene model matches
|
SGN Unigenes
SGN Unigenes
| [Associate new unigene] |
Unigene ID:
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GenBank accessions
GenBank accessions
| [Associate new genbank sequence] |
AY490248 Lycopersicon esculentum CONSTANS interacting protein 6 (CIP6) mRNA, partial cds.
| Other genome matches | None |
Literature annotations [1]
Literature annotations [1]
| [Associate publication] [Matching publications] |
The CCAAT binding factor can mediate interactions between CONSTANS-like proteins and DNA.
The Plant journal : for cell and molecular biology (2006)
Show / hide abstract
Show / hide abstract
CONSTANS-Like (COL) proteins are plant-specific nuclear regulators of gene expression but do not contain a known DNA-binding motif. We tested whether a common DNA-binding protein can deliver these proteins to specific cis-acting elements. We screened for proteins that interact with two members of a subgroup of COL proteins. These COL proteins were Tomato COL1 (TCOL1), which does not seem to be involved in the control of flowering time, and the Arabidopsis thaliana CONSTANS (AtCO) protein which mediates photoperiodic induction of flowering. We show that the C-terminal plant-specific CCT (CO, CO-like, TIMING OF CAB EXPRESSION 1) domain of both proteins binds the trimeric CCAAT binding factor (CBF) via its HAP5/NF-YC component. Chromatin immunoprecipitation demonstrated that TCOL is recruited to the CCAAT motifs of the yeast CYC1 and HEM1 promoters by HAP5. In Arabidopsis, each of the three CBF components is encoded by several different genes that are highly transcribed. Under warm long days, high levels of expression of a tomato HAP5 (THAP5a) gene can reduce the flowering time of Arabidopsis. A mutation in the CCT domain of TCOL1 disrupts the interaction with THAP5 and the analogous mutation in AtCO impairs its function and delays flowering. CBFs are therefore likely to recruit COL proteins to their DNA target motifs in planta.
Ben-Naim, O. Eshed, R. Parnis, A. Teper-Bamnolker, P. Shalit, A. Coupland, G. Samach, A. Lifschitz, E.
The Plant journal : for cell and molecular biology.
2006.
46(3).
462-76.
Ontology annotations (2)
Ontology annotations (2)
| [Add ontology annotations] |
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Mismatched case
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Multiple mismatched case
Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.
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| Attribute | Value |
|---|---|
| Project Name: | |
| Start Date: | |
| End Date: | |
| Event Type: | |
| Event Description: | |
| Event Web URL: |
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