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Tomato locus GAI
| Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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| Registry name: | None | [Associate registry name] |
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| Image | Description | Type |
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Accessions and images (1)
Accessions and images (1)
| [Associate accession] |
Alleles (1)
Alleles (1)
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Associated loci (0)
Associated loci (0)
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| Associated loci - graphical view | None |
SolCyc links
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Sequence annotations
Sequence annotations
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Genome features
Genome features
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Genomic sequence
Genomic sequence
| unprocessed genomic sequence region underlying this gene |
>Solyc11g011260.1 SL2.50ch11:4305535..4303769 (sequence from reverse strand)
ATGAAGAGAGATCGAGATCGAGATCGAGAAAGAGAGAAAAGAGCATTCTCTAATGGTGCTGTTTCTTCAGGGAAAAGTAAGATTTGGGAAGAAGATGAAGAAGAAAAACCAGATGCTGGAATGGATGAGCTTTTAGCTGTTTTGGGTTATAAAGTGAAGTCGTCTGATATGGCGGATGTTGCTCAAAAACTTGAACAGCTTGAGATGGCTATGGGTACAACGATGGAAGATGGTATTACTCATCTTTCTACTGATACCGTTCATAAAAACCCATCTGATATGGCTGGTTGGGTACAAAGTATGTTATCTTCGATTTCGACAAACTTTGATATGTGTAATCAGGAAAACGATGTGCTTGTATCTGGTTGTGGTTCTTCTTCTTCTATAATCGATTTCTCACAAAATCATCGAACAAGTACCATTTCTGATGATGATTTAAGAGCTATACCTGGTGGTGCTGTTTTCAATTCGGATAGTAATAAAAGACACAGATCAACAACTTCTAGTTTTTCAACTACATCCTCATCTATGGTGACAGATTCATCAGCAACGAGACCTGTTGTACTAGTTGATTCACAAGAAACTGGGGTTCGTCTTGTTCATACTTTAATGGCGTGTGCTGAAGCTGTACAACAAGAAAATTTAACTTTAGCGGATCAACTTGTTAGACATATTGGTATTCTTGCGGTTTCACAATCTGGTGCTATGAGAAAAGTTGCTACTTACTTTGCTGAAGCATTAGCAAGAAGAATCTACAAAATTTATCCACAAGATTCAATGGAATCATCATATACAGATGTTTTACAAATGCATTTCTATGAAACTTGCCCTTATCTCAAATTCGCTCATTTTACTGCTAATCAAGCCATTCTTGAAGCGTTTACAGGTTGTAACAAAGTTCATGTAATTGATTTCAGCTTAAAACAGGGTATGCAATGGCCTGCACTTATGCAAGCTTTAGCTTTACGCCCCGGTGGACCTCCGGCATTTAGACTCACCGGAATCGGACCTCCACAGCCGGATAACACAGATGCCTTGCAACAAGTTGGATGGAAGTTAGCTCAGTTAGCGGAAACTATTGGGGTTGAATTTGAATTCAGGGGATTTGTTGCTAATTCATTAGCAGATCTTGATGCGACTATACTTGATATAAGGCCAAGTGAAACTGAAGCAGTAGCTATAAACTCTGTTTTTGAGCTTCATCGATTGTTATCCCGGCCGGGAGCAATTGAAAAAGTGTTGAACTCTATTAAACAGATTAACCCGAAGATTGTTACTCTTGTTGAGCAAGAAGCGAATCATAACGCAGGGGTTTTTATTGATAGATTTAACGAAGCTTTGCATTATTACTCAACCATGTTTGATTCGTTAGAAAGCTCTGGGTCTTCGTCTTCAGCTTCACCAACTGGGATTCTTCCTCAACCTCCGGTGAACAATCAAGATTTGGTGATGTCGGAGGTTTATTTAGGGAGACAGATTTGTAACGTGGTGGCTTGTGAAGGTTCAGATCGAGTTGAACGACATGAAACACTGAATCAATGGAGGGTTAGGATGAACTCATCTGGGTTCGATCCGGTTCATCTGGGTTCAAATGCGTTCAAACAAGCTTCCATGCTTTTAGCTCTGTTCGCCGGCGGCGATGGTTACAGGGTGGAAGAAAACGATGGGTGTCTTATGTTGGGGTGGCATACACGGCCACTTATAGCTACCTCCGCCTGGAAGCTATTGCCGGACTCCGGCACCGGCGCCGGAGAAGTCGAGTTGTAA
ATGAAGAGAGATCGAGATCGAGATCGAGAAAGAGAGAAAAGAGCATTCTCTAATGGTGCTGTTTCTTCAGGGAAAAGTAAGATTTGGGAAGAAGATGAAGAAGAAAAACCAGATGCTGGAATGGATGAGCTTTTAGCTGTTTTGGGTTATAAAGTGAAGTCGTCTGATATGGCGGATGTTGCTCAAAAACTTGAACAGCTTGAGATGGCTATGGGTACAACGATGGAAGATGGTATTACTCATCTTTCTACTGATACCGTTCATAAAAACCCATCTGATATGGCTGGTTGGGTACAAAGTATGTTATCTTCGATTTCGACAAACTTTGATATGTGTAATCAGGAAAACGATGTGCTTGTATCTGGTTGTGGTTCTTCTTCTTCTATAATCGATTTCTCACAAAATCATCGAACAAGTACCATTTCTGATGATGATTTAAGAGCTATACCTGGTGGTGCTGTTTTCAATTCGGATAGTAATAAAAGACACAGATCAACAACTTCTAGTTTTTCAACTACATCCTCATCTATGGTGACAGATTCATCAGCAACGAGACCTGTTGTACTAGTTGATTCACAAGAAACTGGGGTTCGTCTTGTTCATACTTTAATGGCGTGTGCTGAAGCTGTACAACAAGAAAATTTAACTTTAGCGGATCAACTTGTTAGACATATTGGTATTCTTGCGGTTTCACAATCTGGTGCTATGAGAAAAGTTGCTACTTACTTTGCTGAAGCATTAGCAAGAAGAATCTACAAAATTTATCCACAAGATTCAATGGAATCATCATATACAGATGTTTTACAAATGCATTTCTATGAAACTTGCCCTTATCTCAAATTCGCTCATTTTACTGCTAATCAAGCCATTCTTGAAGCGTTTACAGGTTGTAACAAAGTTCATGTAATTGATTTCAGCTTAAAACAGGGTATGCAATGGCCTGCACTTATGCAAGCTTTAGCTTTACGCCCCGGTGGACCTCCGGCATTTAGACTCACCGGAATCGGACCTCCACAGCCGGATAACACAGATGCCTTGCAACAAGTTGGATGGAAGTTAGCTCAGTTAGCGGAAACTATTGGGGTTGAATTTGAATTCAGGGGATTTGTTGCTAATTCATTAGCAGATCTTGATGCGACTATACTTGATATAAGGCCAAGTGAAACTGAAGCAGTAGCTATAAACTCTGTTTTTGAGCTTCATCGATTGTTATCCCGGCCGGGAGCAATTGAAAAAGTGTTGAACTCTATTAAACAGATTAACCCGAAGATTGTTACTCTTGTTGAGCAAGAAGCGAATCATAACGCAGGGGTTTTTATTGATAGATTTAACGAAGCTTTGCATTATTACTCAACCATGTTTGATTCGTTAGAAAGCTCTGGGTCTTCGTCTTCAGCTTCACCAACTGGGATTCTTCCTCAACCTCCGGTGAACAATCAAGATTTGGTGATGTCGGAGGTTTATTTAGGGAGACAGATTTGTAACGTGGTGGCTTGTGAAGGTTCAGATCGAGTTGAACGACATGAAACACTGAATCAATGGAGGGTTAGGATGAACTCATCTGGGTTCGATCCGGTTCATCTGGGTTCAAATGCGTTCAAACAAGCTTCCATGCTTTTAGCTCTGTTCGCCGGCGGCGATGGTTACAGGGTGGAAGAAAACGATGGGTGTCTTATGTTGGGGTGGCATACACGGCCACTTATAGCTACCTCCGCCTGGAAGCTATTGCCGGACTCCGGCACCGGCGCCGGAGAAGTCGAGTTGTAA
| Download sequence region |
Get flanking sequences on SL2.50ch11
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mRNA Solyc11g011260.1.1
mRNA Solyc11g011260.1.1
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| Ontology terms | None | terms associated with this mRNA |
cDNA sequence
cDNA sequence
| spliced cDNA sequence, including UTRs |
>Solyc11g011260.1.1 GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor
ATGAAGAGAGATCGAGATCGAGATCGAGAAAGAGAGAAAAGAGCATTCTCTAATGGTGCTGTTTCTTCAGGGAAAAGTAAGATTTGGGAAGAAGATGAAGAAGAAAAACCAGATGCTGGAATGGATGAGCTTTTAGCTGTTTTGGGTTATAAAGTGAAGTCGTCTGATATGGCGGATGTTGCTCAAAAACTTGAACAGCTTGAGATGGCTATGGGTACAACGATGGAAGATGGTATTACTCATCTTTCTACTGATACCGTTCATAAAAACCCATCTGATATGGCTGGTTGGGTACAAAGTATGTTATCTTCGATTTCGACAAACTTTGATATGTGTAATCAGGAAAACGATGTGCTTGTATCTGGTTGTGGTTCTTCTTCTTCTATAATCGATTTCTCACAAAATCATCGAACAAGTACCATTTCTGATGATGATTTAAGAGCTATACCTGGTGGTGCTGTTTTCAATTCGGATAGTAATAAAAGACACAGATCAACAACTTCTAGTTTTTCAACTACATCCTCATCTATGGTGACAGATTCATCAGCAACGAGACCTGTTGTACTAGTTGATTCACAAGAAACTGGGGTTCGTCTTGTTCATACTTTAATGGCGTGTGCTGAAGCTGTACAACAAGAAAATTTAACTTTAGCGGATCAACTTGTTAGACATATTGGTATTCTTGCGGTTTCACAATCTGGTGCTATGAGAAAAGTTGCTACTTACTTTGCTGAAGCATTAGCAAGAAGAATCTACAAAATTTATCCACAAGATTCAATGGAATCATCATATACAGATGTTTTACAAATGCATTTCTATGAAACTTGCCCTTATCTCAAATTCGCTCATTTTACTGCTAATCAAGCCATTCTTGAAGCGTTTACAGGTTGTAACAAAGTTCATGTAATTGATTTCAGCTTAAAACAGGGTATGCAATGGCCTGCACTTATGCAAGCTTTAGCTTTACGCCCCGGTGGACCTCCGGCATTTAGACTCACCGGAATCGGACCTCCACAGCCGGATAACACAGATGCCTTGCAACAAGTTGGATGGAAGTTAGCTCAGTTAGCGGAAACTATTGGGGTTGAATTTGAATTCAGGGGATTTGTTGCTAATTCATTAGCAGATCTTGATGCGACTATACTTGATATAAGGCCAAGTGAAACTGAAGCAGTAGCTATAAACTCTGTTTTTGAGCTTCATCGATTGTTATCCCGGCCGGGAGCAATTGAAAAAGTGTTGAACTCTATTAAACAGATTAACCCGAAGATTGTTACTCTTGTTGAGCAAGAAGCGAATCATAACGCAGGGGTTTTTATTGATAGATTTAACGAAGCTTTGCATTATTACTCAACCATGTTTGATTCGTTAGAAAGCTCTGGGTCTTCGTCTTCAGCTTCACCAACTGGGATTCTTCCTCAACCTCCGGTGAACAATCAAGATTTGGTGATGTCGGAGGTTTATTTAGGGAGACAGATTTGTAACGTGGTGGCTTGTGAAGGTTCAGATCGAGTTGAACGACATGAAACACTGAATCAATGGAGGGTTAGGATGAACTCATCTGGGTTCGATCCGGTTCATCTGGGTTCAAATGCGTTCAAACAAGCTTCCATGCTTTTAGCTCTGTTCGCCGGCGGCGATGGTTACAGGGTGGAAGAAAACGATGGGTGTCTTATGTTGGGGTGGCATACACGGCCACTTATAGCTACCTCCGCCTGGAAGCTATTGCCGGACTCCGGCACCGGCGCCGGAGAAGTCGAGTTGTAA
ATGAAGAGAGATCGAGATCGAGATCGAGAAAGAGAGAAAAGAGCATTCTCTAATGGTGCTGTTTCTTCAGGGAAAAGTAAGATTTGGGAAGAAGATGAAGAAGAAAAACCAGATGCTGGAATGGATGAGCTTTTAGCTGTTTTGGGTTATAAAGTGAAGTCGTCTGATATGGCGGATGTTGCTCAAAAACTTGAACAGCTTGAGATGGCTATGGGTACAACGATGGAAGATGGTATTACTCATCTTTCTACTGATACCGTTCATAAAAACCCATCTGATATGGCTGGTTGGGTACAAAGTATGTTATCTTCGATTTCGACAAACTTTGATATGTGTAATCAGGAAAACGATGTGCTTGTATCTGGTTGTGGTTCTTCTTCTTCTATAATCGATTTCTCACAAAATCATCGAACAAGTACCATTTCTGATGATGATTTAAGAGCTATACCTGGTGGTGCTGTTTTCAATTCGGATAGTAATAAAAGACACAGATCAACAACTTCTAGTTTTTCAACTACATCCTCATCTATGGTGACAGATTCATCAGCAACGAGACCTGTTGTACTAGTTGATTCACAAGAAACTGGGGTTCGTCTTGTTCATACTTTAATGGCGTGTGCTGAAGCTGTACAACAAGAAAATTTAACTTTAGCGGATCAACTTGTTAGACATATTGGTATTCTTGCGGTTTCACAATCTGGTGCTATGAGAAAAGTTGCTACTTACTTTGCTGAAGCATTAGCAAGAAGAATCTACAAAATTTATCCACAAGATTCAATGGAATCATCATATACAGATGTTTTACAAATGCATTTCTATGAAACTTGCCCTTATCTCAAATTCGCTCATTTTACTGCTAATCAAGCCATTCTTGAAGCGTTTACAGGTTGTAACAAAGTTCATGTAATTGATTTCAGCTTAAAACAGGGTATGCAATGGCCTGCACTTATGCAAGCTTTAGCTTTACGCCCCGGTGGACCTCCGGCATTTAGACTCACCGGAATCGGACCTCCACAGCCGGATAACACAGATGCCTTGCAACAAGTTGGATGGAAGTTAGCTCAGTTAGCGGAAACTATTGGGGTTGAATTTGAATTCAGGGGATTTGTTGCTAATTCATTAGCAGATCTTGATGCGACTATACTTGATATAAGGCCAAGTGAAACTGAAGCAGTAGCTATAAACTCTGTTTTTGAGCTTCATCGATTGTTATCCCGGCCGGGAGCAATTGAAAAAGTGTTGAACTCTATTAAACAGATTAACCCGAAGATTGTTACTCTTGTTGAGCAAGAAGCGAATCATAACGCAGGGGTTTTTATTGATAGATTTAACGAAGCTTTGCATTATTACTCAACCATGTTTGATTCGTTAGAAAGCTCTGGGTCTTCGTCTTCAGCTTCACCAACTGGGATTCTTCCTCAACCTCCGGTGAACAATCAAGATTTGGTGATGTCGGAGGTTTATTTAGGGAGACAGATTTGTAACGTGGTGGCTTGTGAAGGTTCAGATCGAGTTGAACGACATGAAACACTGAATCAATGGAGGGTTAGGATGAACTCATCTGGGTTCGATCCGGTTCATCTGGGTTCAAATGCGTTCAAACAAGCTTCCATGCTTTTAGCTCTGTTCGCCGGCGGCGATGGTTACAGGGTGGAAGAAAACGATGGGTGTCTTATGTTGGGGTGGCATACACGGCCACTTATAGCTACCTCCGCCTGGAAGCTATTGCCGGACTCCGGCACCGGCGCCGGAGAAGTCGAGTTGTAA
Protein sequence
Protein sequence
| translated polypeptide sequence |
>Solyc11g011260.1.1 GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor
MKRDRDRDREREKRAFSNGAVSSGKSKIWEEDEEEKPDAGMDELLAVLGYKVKSSDMADVAQKLEQLEMAMGTTMEDGITHLSTDTVHKNPSDMAGWVQSMLSSISTNFDMCNQENDVLVSGCGSSSSIIDFSQNHRTSTISDDDLRAIPGGAVFNSDSNKRHRSTTSSFSTTSSSMVTDSSATRPVVLVDSQETGVRLVHTLMACAEAVQQENLTLADQLVRHIGILAVSQSGAMRKVATYFAEALARRIYKIYPQDSMESSYTDVLQMHFYETCPYLKFAHFTANQAILEAFTGCNKVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVANSLADLDATILDIRPSETEAVAINSVFELHRLLSRPGAIEKVLNSIKQINPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSLESSGSSSSASPTGILPQPPVNNQDLVMSEVYLGRQICNVVACEGSDRVERHETLNQWRVRMNSSGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENDGCLMLGWHTRPLIATSAWKLLPDSGTGAGEVEL*
MKRDRDRDREREKRAFSNGAVSSGKSKIWEEDEEEKPDAGMDELLAVLGYKVKSSDMADVAQKLEQLEMAMGTTMEDGITHLSTDTVHKNPSDMAGWVQSMLSSISTNFDMCNQENDVLVSGCGSSSSIIDFSQNHRTSTISDDDLRAIPGGAVFNSDSNKRHRSTTSSFSTTSSSMVTDSSATRPVVLVDSQETGVRLVHTLMACAEAVQQENLTLADQLVRHIGILAVSQSGAMRKVATYFAEALARRIYKIYPQDSMESSYTDVLQMHFYETCPYLKFAHFTANQAILEAFTGCNKVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVANSLADLDATILDIRPSETEAVAINSVFELHRLLSRPGAIEKVLNSIKQINPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSLESSGSSSSASPTGILPQPPVNNQDLVMSEVYLGRQICNVVACEGSDRVERHETLNQWRVRMNSSGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENDGCLMLGWHTRPLIATSAWKLLPDSGTGAGEVEL*
Gene model matches
Gene model matches
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SGN Unigenes
SGN Unigenes
| [Associate new unigene] |
Unigene ID:
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GenBank accessions
GenBank accessions
| [Associate new genbank sequence] |
AY269087 Lycopersicon esculentum GAI-like protein mRNA, complete cds.
| Other genome matches | None |
Literature annotations [2]
Literature annotations [2]
| [Associate publication] [Matching publications] |
Down-regulation of DELLA genes is not essential for germination of tomato, soybean, and Arabidopsis seeds.
Plant physiology (2004)
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The relationship between expression of a negative regulator of GA signal transduction (RGL2) belonging to the DELLA gene family and repression of Arabidopsis seed germination has been studied (Lee S, Cheng H, King KE, Wang W, He Y, Hussain A, Lo J, Harberd NP, Peng J [2002] Genes and Development 16: 646-658). There is one DELLA gene (LeGAI) present in tomato (Lycopersicon esculentum Mill.), which is expressed in both vegetative and reproductive tissues. During germination of wild-type tomato seed, there was no decline in the expression of LeGAI in either the embryo or the endosperm. Rather, LeGAI transcripts increased in these tissues following imbibition and remained high during and following germination. A similar increase in LeGAI transcripts occurred in the endosperm and embryo of GA-treated gib-1 mutant seed during and following germination. Likewise in soybean (Glycine max) seed, there was no decline in the expression of two DELLA genes in the radicle before or after germination. Upon reexamination of RGL2 in Arabidopsis seeds, a decline in its expression was noted but only after radicle emergence, i.e. after germination had been completed. Taken together, these data are consistent with GA-induced down-regulation of DELLA genes not being a prerequisite for germination of tomato, soybean, and Arabidopsis seeds.
Bassel, George. Zielinska, Elzbieta. Mullen, Robert. Bewley, J.
Plant physiology.
2004.
136(1).
2782-9.
Procera is a putative DELLA mutant in tomato (Solanum lycopersicum): effects on the seed and vegetative plant.
Journal of experimental botany (2008)
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The procera (pro) mutant of tomato exhibits a well-characterized constitutive gibberellic acid (GA) response phenotype. The tomato DELLA gene LeGAI in the pro mutant background contains a point mutation that results in an amino acid change in the conserved VHVID putative DNA-binding domain in LeGAI to VHEID. This same point mutation is in four different genetic backgrounds exhibiting the pro phenotype, suggesting that this mutation co-segregates with the pro phenotype. Complementation of the mutant with a constitutively expressed wild-type LeGAI gene sequence was not conclusive due to the infertility of transgenic plants. The pro mutation alters tomato branching architecture through differential suppression of axillary bud development, indicating a role for DELLA proteins in the regulation of plant structure. Isolated gib-1 pro double mutant embryo axes, which are unable to synthesize GA, germinate faster than their wild-type counterparts, and exert greater embryo growth potential. The pro mutation is therefore regulating GA responses within the tomato embryo. Transient expression of a LeGAI-GFP (green fluorescent protein) fusion protein in onion epidermis results in its location to the nucleus, and this protein is rapidly degraded by the proteasome in the presence of GA.
Bassel, GW. Mullen, RT. Bewley, JD.
Journal of experimental botany.
2008.
59(3).
585-93.
Ontology annotations (15)
Ontology annotations (15)
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