Clone Read SL_MboI0058H14_SP6_161247

Sequence Read 
Read Class
BAC ends
Read ID
SL_MboI0058H14_SP6_161247
Primer
SP6
ID from Seq. Facility
SL_MboI_58_H14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
647 trimmed for vector and quality, 837 raw
Genbank Accession
CZ976219
Sequence
>SL_MboI0058H14_SP6_161247 (raw untrimmed)
NCGTAGTATCGAGTCGATCAGAGGATCACTGCCGCTATGATTCTACACCTAGATGCTCTTCTATTTGTATCTCGGATGACTTACCAACATTGTAGAATAT
AGCAGATACCAATTGGAGCTCACCTCTCTGCCTCATGGACCTACAAATGTTAAAGGTCACTTCTTCATTGTTCAACCAAAATTTCATGTGCCCCTTTTCC
ATATCAACTAAGGCTCTACCCGTAGCAAGGAATGGTCTCCCAAAAATAATAGGAACTTTAAAATCGTCTTCACAATCAAGAATAACAAAATCTTCTGGAA
ATATGAACGACTCCACTTTTACTAGCACATCGTGGAGTATCACTATAGGCCTTTTTACTGTTCGATCGGCCATCAGTAGTCGTATCGTAGTGGCCTTTGG
ATCACCCAAACCCAATAAATCGAAAGGGGCATGACATTTATGCTTGCCCCCGGATCACATAATGCTTTCGCAAAATGTAATAACCCGATTGTACAAGGAA
TAATGAACACACCTGGATCTTCTTTCTTTTGTACTAGAGATCTTGTAGGAATAACATTATAATGCTGCATTTTATCATCATCCTCAAAAGTGACCGATCT
TTTCTTTGTAACCAGATCTTTCATAAACTTGGCATAACCAGGCATTTTGTTCTAAAGATCTTACCAAAGGGACATTGATAGAAAGCTGCTTCAACATTGT
TATAAAAACGCTGATATTTACCATCCTCAGTCTTTTTCACTATTCCTTTGAAGAAAGGGGGATGGGTGTCTTAAGCATTGGGAATTACCTTTTTTAAGGA
CCTTTCAACCATTATTTTCCAATTGGTTAATTTTCTG
>SL_MboI0058H14_SP6_161247 (trimmed for quality and cloning vector)
GGATCACTGCCGCTATGATTCTACACCTAGATGCTCTTCTATTTGTATCTCGGATGACTTACCAACATTGTAGAATATAGCAGATACCAATTGGAGCTCA
CCTCTCTGCCTCATGGACCTACAAATGTTAAAGGTCACTTCTTCATTGTTCAACCAAAATTTCATGTGCCCCTTTTCCATATCAACTAAGGCTCTACCCG
TAGCAAGGAATGGTCTCCCAAAAATAATAGGAACTTTAAAATCGTCTTCACAATCAAGAATAACAAAATCTTCTGGAAATATGAACGACTCCACTTTTAC
TAGCACATCGTGGAGTATCACTATAGGCCTTTTTACTGTTCGATCGGCCATCAGTAGTCGTATCGTAGTGGCCTTTGGATCACCCAAACCCAATAAATCG
AAAGGGGCATGACATTTATGCTTGCCCCCGGATCACATAATGCTTTCGCAAAATGTAATAACCCGATTGTACAAGGAATAATGAACACACCTGGATCTTC
TTTCTTTTGTACTAGAGATCTTGTAGGAATAACATTATAATGCTGCATTTTATCATCATCCTCAAAAGTGACCGATCTTTTCTTTGTAACCAGATCTTTC
ATAAACTTGGCATAACCAGGCATTTTGTTCTAAAGATCTTACCAAAG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.969532
Expected error %
0.215701
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T12086 Score 84 E Value 4e-27 Identity 38.00% Align. Length 532bp (82.23%) Frame 2
hypothetical protein - fava bean (fragment) dbj|BAA22788.1| retrotransposon-like gene~the first amino acid was determined to be leucine [Vicia faba]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAX92771.1| Score 74 E Value 7e-22 Identity 42.90% Align. Length 496bp (76.66%) Frame 2
Transposable element protein, putative [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone SL_MboI0058H14
Clone
Clone name
slm-58h14
SL_MboI0058H14
C01SLm0058H14
Clone type
BAC
Contamination
none
Estimated length
83,280
Library
Name
Tomato MboI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pECBAC1
Accession
Heinz 1706
Restriction enzyme
MboI

Other Reads:
1 sequencing reads found