Clone Read SL_MboI0058H18_SP6_161255

Sequence Read 
Read Class
BAC ends
Read ID
SL_MboI0058H18_SP6_161255
Primer
SP6
ID from Seq. Facility
SL_MboI_58_H18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
559 trimmed for vector and quality, 836 raw
Genbank Accession
CZ976227
Sequence
>SL_MboI0058H18_SP6_161255 (raw untrimmed)
GCAGTCGCTCTAGAGGATCACATCCATTCTTCCTGTTGAAGGGTTAGGAGTTGATGAGAACCTTTCTTATGAAGAGGTTCCAGTTTAAAATTTAGATCGC
CAAGTGAAGCAGCTGAGGAACAAGGAGGTTGCCACCGTAAAGGTGTTATGGAGGAACCATCTTGTTGAGGGAGCAACATGGTAGGCCGAGGCCGATGTGA
GATCCCGTTACCCTCATTTGTTCAGTTCTTGAGGTTAGACATACTCTTTCTAAGTCTTATTTTGTTTATGAAACTCTAAATTTTAGTTCATTAGTCGATT
TTGGTGTTGTAAGTCCGTAACTGTGTGTTTTATGATTTCATGCTTGCATTCATATTGCTATTTTTGTATATAGTTGACATGATTTTTCTGTTGCATGAGT
TGTGATGTGCATTGAGTAAAAATCAGATTGAGAAGGAAGTTCCTCAAACTCAGATACGAAACTTCATATAAGCTTTGAGTGTTATGCATCATCCAGAGTA
AATTGTGAATCAGATATTCACAAAGATGAAGTTTCAAGCATGTTGATGTGTTTTCTAAAATACGCTCTCTAATTCAAAATGACGTGTAGTGTCATTTGGT
GATGAATGTTCTAAAGATGGGGATAATGTTTCTTTCCATAATATGTTTTCCTCTGTTTTAATATCCTTTTTAGTATTTATCATCATGTATCTGGTGGTTA
CCTTATGTTTCTCTATTTCCCACATTTCGTTTTTTTAATTGTACTATTCATCAATTTATTAGCTTTTTCGGTTTATACTTCATATTTATTCATTGTTACA
CCATTGCTTTTCTACCATATATTCCTAACATTTTCC
>SL_MboI0058H18_SP6_161255 (trimmed for quality and cloning vector)
CATCCATTCTTCCTGTTGAAGGGTTAGGAGTTGATGAGAACCTTTCTTATGAAGAGGTTCCAGTTTAAAATTTAGATCGCCAAGTGAAGCAGCTGAGGAA
CAAGGAGGTTGCCACCGTAAAGGTGTTATGGAGGAACCATCTTGTTGAGGGAGCAACATGGTAGGCCGAGGCCGATGTGAGATCCCGTTACCCTCATTTG
TTCAGTTCTTGAGGTTAGACATACTCTTTCTAAGTCTTATTTTGTTTATGAAACTCTAAATTTTAGTTCATTAGTCGATTTTGGTGTTGTAAGTCCGTAA
CTGTGTGTTTTATGATTTCATGCTTGCATTCATATTGCTATTTTTGTATATAGTTGACATGATTTTTCTGTTGCATGAGTTGTGATGTGCATTGAGTAAA
AATCAGATTGAGAAGGAAGTTCCTCAAACTCAGATACGAAACTTCATATAAGCTTTGAGTGTTATGCATCATCCAGAGTAAATTGTGAATCAGATATTCA
CAAAGATGAAGTTTCAAGCATGTTGATGTGTTTTCTAAAATACGCTCTCTAATTCAAAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.946129
Expected error %
0.156051
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 96 E Value 7e-19 Identity 21.90% Align. Length 209bp (37.39%) Frame 1
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 91 E Value 1e-17 Identity 20.50% Align. Length 209bp (37.39%) Frame 1
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone SL_MboI0058H18
Clone
Clone name
slm-58h18
SL_MboI0058H18
C01SLm0058H18
Clone type
BAC
Contamination
none
Estimated length
153,641
Library
Name
Tomato MboI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pECBAC1
Accession
Heinz 1706
Restriction enzyme
MboI

Other Reads:
1 sequencing reads found