Clone Read SL_MboI0005A10_T7_189310

Sequence Read 
Read Class
BAC ends
Read ID
SL_MboI0005A10_T7_189310
Primer
T7
ID from Seq. Facility
SL_MboI_5_A10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
611 trimmed for vector and quality, 914 raw
Genbank Accession
CZ989598
Sequence
>SL_MboI0005A10_T7_189310 (raw untrimmed)
GTCGGGGTCTGAGAGGTTACATATGAGTAGGATGATATTGTTTGTCACTAGCTTGGGTCGTGCATCAAGCACAGAGGGTAGAGCTACAATGATAATAGGA
GACATTTACATATCAAGGTTTATGGTTTATGTGCAGCAGGTTGAAGAAAATAAGTTGAGGGACAGAGAAGAGTATAGAAATAAGAAAGCTAAGACAATGA
GTCCGGGCAATAGAAGAGTAATGCAAATTGTTCATCGTTTCAATATATACAGATGGGTCCTGCCCCATCATCTATTAGTGCACATACACTTAAGAACAAA
GCTTAGAATTATGGTCAGAATTCCATAGCTAAACATGTAATTCACAGGGTAGTGTAGTGCAAGGGGGTAGTAAGGCTCCTGCCTGCACCAAGTGTGGTAG
AAACCACTGTAGTGTTTGTCGTGAGGTATCCACTTGTTGTTTCAAGTGCAGTCGGATAAGGAATTTTGGGATTGTGAACAAAGAACAAGAAAGGAAGTGG
TAATAGGGTAAATAGAGCCCAGTTTTCGTTAGTTGCTCCACGAGATAGGCCTGCACCTAGGGGAGCTACTTACGGTACTGGTAGATTAACAAACCTCTTG
TATGCTAGTGAACCATTCAATGTATCCATACTTGTTGATAATCCATTCTAGCATAAAGAGTCTATCATGATTGTCATAGGTTTCATCAATCATAATAGTA
CCATCTCTGATTTTGTTTGAGTTCTAACTTCCTTAAACCTTCAAGGTCTTTTCTTGGTTTTGATCTGCCTTTTTTACTTCGTTTTTGACTCAATTGGATT
TCTCAAAATCTCTGTTTGTTTATCTTTTATGTTTATCAAAAGGAGCCCTATTTTTCATACTTGGTATAACTCATTTTTAATTATGTTCTCTAAATGTTAT
ATTTATTTTCTTCA
>SL_MboI0005A10_T7_189310 (trimmed for quality and cloning vector)
GGTTACATATGAGTAGGATGATATTGTTTGTCACTAGCTTGGGTCGTGCATCAAGCACAGAGGGTAGAGCTACAATGATAATAGGAGACATTTACATATC
AAGGTTTATGGTTTATGTGCAGCAGGTTGAAGAAAATAAGTTGAGGGACAGAGAAGAGTATAGAAATAAGAAAGCTAAGACAATGAGTCCGGGCAATAGA
AGAGTAATGCAAATTGTTCATCGTTTCAATATATACAGATGGGTCCTGCCCCATCATCTATTAGTGCACATACACTTAAGAACAAAGCTTAGAATTATGG
TCAGAATTCCATAGCTAAACATGTAATTCACAGGGTAGTGTAGTGCAAGGGGGTAGTAAGGCTCCTGCCTGCACCAAGTGTGGTAGAAACCACTGTAGTG
TTTGTCGTGAGGTATCCACTTGTTGTTTCAAGTGCAGTCGGATAAGGAATTTTGGGATTGTGAACAAAGAACAAGAAAGGAAGTGGTAATAGGGTAAATA
GAGCCCAGTTTTCGTTAGTTGCTCCACGAGATAGGCCTGCACCTAGGGGAGCTACTTACGGTACTGGTAGATTAACAAACCTCTTGTATGCTAGTGAACC
ATTCAATGTAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.967409
Expected error %
0.17111
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 83 E Value 2e-28 Identity 42.30% Align. Length 580bp (94.93%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 83 E Value 1e-26 Identity 64.10% Align. Length 441bp (72.18%) Frame 1
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone SL_MboI0005A10
Clone
Clone name
slm-5a10
SL_MboI0005A10
C01SLm0005A10
Clone type
BAC
Contamination
none
Estimated length
117,567
Library
Name
Tomato MboI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pECBAC1
Accession
Heinz 1706
Restriction enzyme
MboI

Other Reads:
1 sequencing reads found