Clone Read SL_MboI0015P05_SP6_213857

Sequence Read 
Read Class
BAC ends
Read ID
SL_MboI0015P05_SP6_213857
Primer
SP6
ID from Seq. Facility
SL_MboI_15_P05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
616 trimmed for vector and quality, 892 raw
Sequence
>SL_MboI0015P05_SP6_213857 (raw untrimmed)
ATGCTGCAGTCACTCTAGAGGATCCATCGTCTACCAAAACACGATCGAGGACCTTTCTGCGGCATATCACAGTGACGTGTAGAGCTTTGTTATGGGATCT
CCCTTCGGCTGGCAATTCATCATCGCAGAAGCTAATGAGATGTCCCCGAATTACCTGGTGAATCATGGTAGCTACGTTATCGCTTCTTGTACCTGAGGGC
ACATACGTGTCATCCAGAGCTTTCATCAAAGCCAGTCTGTGGGACAAGGAGCTCATCAGTAGGGTCCACACAGACATCTGGGTCGGAGTCTTCTCAAGTG
TTTGACAATGGAGTAATCTTTAGGCTGCATTCTCCTCCAGAACTTCTCGGCTTCTGCTTCACTTATTTGTCTCTTGGCATGATCTTTCTTTTGCCCTCCG
AGAGCAAGCTCATCAGGAGTGTTGCATCTTCTAGATCTAGTCATGCCATGGGCCACAGTCGTTTCTATAACAAACTTGGGTTTGGCGAGAGTCTTCGAGG
GCACCAAGGCAACAGCCTTTGCAGGTGTCAGAATAACGAACTCTCCTTTTTCCGTGACTCTTAAAGAAGCGACAACCTTTTCCAAGTCTTCCTGCACAAC
AGGAGTAATCCTCTTGGTTTCACGCTTATCTTCCTCTGGTTATATCATGTTGATGTTTCCAGCCCCCATGATTCAGCAACGGATTTTTTATTGAACTTTC
GGTGGCCCCAGGTTGGAAGGAAACCTCCTTCCTTGTCCGATCAAATCTTGGATCTTGGTTGTTAAAAATTGATTCGTCTCCTTCATGTTCATGTTCTAAC
CTTTTTGGAATGACTATGCTCATTCTTCGCTCTGGTTTTCACAATTTTATAGTGTGATTTTACTCGGTCTTTGCGCCCCTCCCATAATTTAA
>SL_MboI0015P05_SP6_213857 (trimmed for quality and cloning vector)
TCTAGAGGATCCATCGTCTACCAAAACACGATCGAGGACCTTTCTGCGGCATATCACAGTGACGTGTAGAGCTTTGTTATGGGATCTCCCTTCGGCTGGC
AATTCATCATCGCAGAAGCTAATGAGATGTCCCCGAATTACCTGGTGAATCATGGTAGCTACGTTATCGCTTCTTGTACCTGAGGGCACATACGTGTCAT
CCAGAGCTTTCATCAAAGCCAGTCTGTGGGACAAGGAGCTCATCAGTAGGGTCCACACAGACATCTGGGTCGGAGTCTTCTCAAGTGTTTGACAATGGAG
TAATCTTTAGGCTGCATTCTCCTCCAGAACTTCTCGGCTTCTGCTTCACTTATTTGTCTCTTGGCATGATCTTTCTTTTGCCCTCCGAGAGCAAGCTCAT
CAGGAGTGTTGCATCTTCTAGATCTAGTCATGCCATGGGCCACAGTCGTTTCTATAACAAACTTGGGTTTGGCGAGAGTCTTCGAGGGCACCAAGGCAAC
AGCCTTTGCAGGTGTCAGAATAACGAACTCTCCTTTTTCCGTGACTCTTAAAGAAGCGACAACCTTTTCCAAGTCTTCCTGCACAACAGGAGTAATCCTC
TTGGTTTCACGCTTAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.990203
Expected error %
0.362309
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89777.1| Score 149 E Value 3e-69 Identity 65.10% Align. Length 595bp (96.59%) Frame 2
gag-pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ82035.1| Score 82 E Value 1e-14 Identity 14.90% Align. Length 281bp (45.62%) Frame 2
gag/pol polyprotein [Pisum sativum]
Manual Annotations
No manual annotations found.
BAC 
Clone SL_MboI0015P05
Clone
Clone name
slm-15p5
SL_MboI0015P05
C01SLm0015P05
Clone type
BAC
Contamination
none
Estimated length
98,819
Library
Name
Tomato MboI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pECBAC1
Accession
Heinz 1706
Restriction enzyme
MboI

Other Reads:
1 sequencing reads found