Clone Read SL_EcoRI0022J17_SP6_235504

Sequence Read 
Read Class
BAC ends
Read ID
SL_EcoRI0022J17_SP6_235504
Primer
SP6
ID from Seq. Facility
SL_EcoRI_022_J17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
601 trimmed for vector and quality, 923 raw
Genbank Accession
CZ932223
Sequence
>SL_EcoRI0022J17_SP6_235504 (raw untrimmed)
GGGGCGCATTCTCNGCGGTCGCTCTGAGGATCCCCGGGTCCGAGCTCGAATTCTTAGTAATGTCTTTTGGGCTTACGAATGCCCCTGTTGCTTTCATGGG
CCTGATGAATGGCATTTTTAAGCCATATCTTGTTCTCTTTGTTATCGTATTTATTGATGATATACTGATATTCTCAAAGAGCAGGAAAGAACCTGAGGAG
CATTTGAAAATTGTATTGGAATTGTTGAGGGGGAAAAGTCTTAATGCCAAATTCTCCAAGTGTGAGTTTTTGCTAGATTCAGTGTCCTTCTTAGGGCACG
TGGTTTCTAAGGATGTGGTGATGGTGGATCCTTCCAAGATTGAAGCAGTGAAGAGTTGGATAAGACCTACTAATGTTACTGGGGTAAGGAGCTTTGTTGG
TTTAGCTAGCTACTACCGTCGATTTGTCAAGGGATTCTCTTCTGTTTGTTCCCAACTGACAAATTTGACTAAGCAAAATGTTCCATTTGTGTGGTCGGAC
GAATGTGAAGAAAGCTTCCAGAACCTCAAGACCTTGTTGACTACTGCACCAATTCTTACCTTGCCCATGGTAAGAATTTCATTGTTTACTGTGATGCATC
TTACTCTGGTTTGGGTGCAGTGCTAATGCANGAGAAGAATGTAATTGCTTATCCTTCGAGGCAACTAAAGGTGCATGAACGCAACTATCCCACCCATGAT
TTGGAGTTGGCTGCAGTAGTGTTTGCATCAAAGCAATGGAGACCTTATCCATATGGGGGTTAATTGTGAAGTCTATTACAAATCATCCTAATTTTATAAT
AAGTCCTTTCCTCATAAATATTTGGAATTTGAGACCTAACGAGGTGGATGGAACCTTCTTAGGGAAAATGATACTTCTACCTTTGTATCCCCCCAGAAAA
TGTTTTTTTTTGGGGTCTAACCC
>SL_EcoRI0022J17_SP6_235504 (trimmed for quality and cloning vector)
AGGATCCCCGGGTCCGAGCTCGAATTCTTAGTAATGTCTTTTGGGCTTACGAATGCCCCTGTTGCTTTCATGGGCCTGATGAATGGCATTTTTAAGCCAT
ATCTTGTTCTCTTTGTTATCGTATTTATTGATGATATACTGATATTCTCAAAGAGCAGGAAAGAACCTGAGGAGCATTTGAAAATTGTATTGGAATTGTT
GAGGGGGAAAAGTCTTAATGCCAAATTCTCCAAGTGTGAGTTTTTGCTAGATTCAGTGTCCTTCTTAGGGCACGTGGTTTCTAAGGATGTGGTGATGGTG
GATCCTTCCAAGATTGAAGCAGTGAAGAGTTGGATAAGACCTACTAATGTTACTGGGGTAAGGAGCTTTGTTGGTTTAGCTAGCTACTACCGTCGATTTG
TCAAGGGATTCTCTTCTGTTTGTTCCCAACTGACAAATTTGACTAAGCAAAATGTTCCATTTGTGTGGTCGGACGAATGTGAAGAAAGCTTCCAGAACCT
CAAGACCTTGTTGACTACTGCACCAATTCTTACCTTGCCCATGGTAAGAATTTCATTGTTTACTGTGATGCATCTTACTCTGGTTTGGGTGCAGTGCTAA
T

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.966126
Expected error %
0.0621674
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 196 E Value 1e-51 Identity 59.90% Align. Length 577bp (96.01%) Frame 2
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39297.1| Score 181 E Value 7e-47 Identity 56.30% Align. Length 577bp (96.01%) Frame 2
putative gag-pol protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone SL_EcoRI0022J17
Clone
Clone name
sle-22j17
SL_EcoRI0022J17
C01SLe0022J17
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato EcoRI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pIndigoBAC-5
Accession
Heinz 1706
Restriction enzyme
EcoRI

Other Reads:
1 sequencing reads found